| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,081,830 – 17,081,934 |
| Length | 104 |
| Max. P | 0.720175 |
| Location | 17,081,830 – 17,081,934 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 79.61 |
| Mean single sequence MFE | -20.57 |
| Consensus MFE | -14.60 |
| Energy contribution | -14.72 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.720175 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17081830 104 - 27905053 AAGAUUGAACGGAAUUUAUUGCUGACACCCUAAUAAAAUUAACAUUGAAAUGGCAAUUUGAGGCGGCAAUAAGAAUCAGCAGCCGAAGUAUCA---------GUAUCUGAAUC- .........((((......((((((.(((((....(((((..(((....)))..))))).)))((((..............))))..)).)))---------)))))))....- ( -19.34) >DroVir_CAF1 43778 106 - 1 AAGAUUGAAGACAAUUUAUGGCUGACACCCUAAUAAAAUUAACAUUGAAAUGGCAAUUUGAGGCGGCAAUAAGCAUCAGCAGCAGCCACAAC--------CAACUGAGGAAAGA .((((((....)))))).((((((.(.((((....(((((..(((....)))..))))).))).).......((....)).)))))))...(--------(......))..... ( -20.20) >DroPse_CAF1 32044 113 - 1 AAGAUUGAACGAAAUUUAUUGCUGACACCCUAAUAAAAUUAACAUUGAAAUGGCAAUUUGAGGCAGCAAUAAGAAUCAGCAGCAGUGGCAUCAGUAGACGCAGCAUCAGCAAC- ..(.((((..((..((((((((((....(((....(((((..(((....)))..))))).)))))))))))))..)).((.((.((.((....))..)))).)).)))))...- ( -23.20) >DroGri_CAF1 30394 102 - 1 AAGAUUGAAGGCAAUUUAUAGCUGACACCCUAAUAAAAUUAACAUUGAAAUGGCAAUUUGAGGCAGCAAUAAGAAUCAGCAACAGCAGCAGC--------CAACUGA----AGA .........(((..(((((.((((....(((....(((((..(((....)))..))))).))))))).))))).....((....))....))--------)......----... ( -19.00) >DroWil_CAF1 55462 92 - 1 AAGAUUGAACCAAAUUUAUUGCUGACACCCUAAUAAAAUUAACAUUGAAAUGGCAAUUUGAGGCAGCAAUAAGAAUCAGUAACCGCCGAUUC---------------------- ...............(((((((((....(((....(((((..(((....)))..))))).))))))))))))(((((.((....)).)))))---------------------- ( -19.10) >DroPer_CAF1 31936 110 - 1 AAGAUUGAACGAAAUUUAUUGCUGACACCCUAAUAAAAUUAACAUUGAAAUGGCAAUUUGAGGCAGCAAUAAGAAUCAG---CAGUGGCAUCAGUAGACGCAGCAUCAGCAAC- ..(.((((..((..((((((((((....(((....(((((..(((....)))..))))).)))))))))))))..))..---..((.((.((....)).)).)).)))))...- ( -22.60) >consensus AAGAUUGAACGAAAUUUAUUGCUGACACCCUAAUAAAAUUAACAUUGAAAUGGCAAUUUGAGGCAGCAAUAAGAAUCAGCAGCAGCAGCAUC________CAGCAUC_G_AAC_ ..............((((((((((....(((....(((((..(((....)))..))))).)))))))))))))......................................... (-14.60 = -14.72 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:34 2006