Locus 6486

Sequence ID 3R_DroMel_CAF1
Location 17,075,739 – 17,075,847
Length 108
Max. P 0.513895
window10555

overview

Window 5

Location 17,075,739 – 17,075,847
Length 108
Sequences 5
Columns 118
Reading direction forward
Mean pairwise identity 83.29
Mean single sequence MFE -22.68
Consensus MFE -10.44
Energy contribution -11.56
Covariance contribution 1.12
Combinations/Pair 1.10
Mean z-score -2.45
Structure conservation index 0.46
SVM decision value -0.04
SVM RNA-class probability 0.513895
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17075739 108 + 27905053
GGAAACAAAGCCAUUGCCACAAUAACAAAUUAUUGUAUAAUCAUUAUCGAAGAGAAAAAAUUAACUCCGCCAGGA-GGAGGGGAAUAUCUUUCACACACUU---------UCCACAUU
(((((.((((..(((.(((((((((....)))))))............................((((....)))-)...)).)))..)))).......))---------)))..... ( -17.60)
>DroSec_CAF1 27342 109 + 1
GGAAACAAAGCCAUGGCCACAAUAACAAAUUAUUGUAUAAUCAUUAUCGAAGAGAAAAAAAAAACUCCGCCAUGGGGGAGGGGAAAAUCUCCCACGCACUU---------UCCACAUU
(((((.....(((((((.(((((((....)))))))...............(((..........))).)))))))((((((......))))))......))---------)))..... ( -31.40)
>DroSim_CAF1 27182 109 + 1
GGAAACAAAGCCAUGGCCACAAUAACAAAUUAUUGUAUAAUCAUUAUCGAAGAGAAAAAAAGAACUCCGCCAUAAGGGAGGGGAAAAUCUCCCACGCACUU---------UCCACAUU
(((((....((.(((((.(((((((....)))))))...............(((..........))).)))))..((((((......))))))..))..))---------)))..... ( -25.90)
>DroEre_CAF1 27977 113 + 1
GGAAACAAAGCCAUAGUUACAAUAACAAAUUAUUGUAUAAUCAUUAGCGAGUAGAAAAA----ACUGCGCGAGAA-GGAGGGGAAAAUCUCCCACACACUUUCCACACUUUCCACAUU
(((((....((......((((((((....)))))))).............((((.....----.))))))(.(((-((..((((.....)))).....))))))....)))))..... ( -23.10)
>DroYak_CAF1 33544 98 + 1
GGAAACAAAGCCAUAGCCACAAUAACAAAUAAUUGUUUCAUCAUUAUCGACGAGAAAAA----ACUUCUCGA-------GGGGAAAAUCUGCCACACACUU---------UCCACAUU
(((((.....((...(..(((((........)))))..)...........((((((...----..)))))).-------))((........))......))---------)))..... ( -15.40)
>consensus
GGAAACAAAGCCAUAGCCACAAUAACAAAUUAUUGUAUAAUCAUUAUCGAAGAGAAAAAA__AACUCCGCCAGAA_GGAGGGGAAAAUCUCCCACACACUU_________UCCACAUU
(((...............(((((((....)))))))...............(((..........((((........))))((((.....)))).....))).........)))..... (-10.44 = -11.56 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:33 2006