Locus 6485

Sequence ID 3R_DroMel_CAF1
Location 17,064,008 – 17,064,107
Length 99
Max. P 0.768880
window10554

overview

Window 4

Location 17,064,008 – 17,064,107
Length 99
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 96.57
Mean single sequence MFE -23.90
Consensus MFE -19.98
Energy contribution -20.14
Covariance contribution 0.16
Combinations/Pair 1.03
Mean z-score -1.64
Structure conservation index 0.84
SVM decision value 0.52
SVM RNA-class probability 0.768880
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17064008 99 + 27905053
GUCGGAAUCAAUUGGACUUCAUAACUACUUUGUAGGAAAGUCUGAAGUUGAUCAUUGUUUGCAGUGCCAAGGUUAAUCAGUUGAUUGAUUUAAUACUUA
...((.(((((((((((((.....((((...))))..))))))..)))))))(((((....))))))).(((((((((....)))))))))........ ( -22.10)
>DroSec_CAF1 14484 99 + 1
GUCGGAAUCAAUUGGACUUCAUAACUACUUUGUUGGAAAGUCUGAAGUUGAUCAUUGUUUGCAGUGCCAAGGUUAAUCAGUUGAUUGAUUUAAUACUUA
...((.(((((((((((((..((((......))))..))))))..)))))))(((((....))))))).(((((((((....)))))))))........ ( -25.10)
>DroSim_CAF1 14278 99 + 1
GUCGGAAUCAAUUGGACUUCAUAACUACUUUGUUGGAAAGUCUGAAGUUGAUCAUUGUUUGCAGUGCCAAGGUUAAUCAGUUGAUUGAUUUAAUACUUA
...((.(((((((((((((..((((......))))..))))))..)))))))(((((....))))))).(((((((((....)))))))))........ ( -25.10)
>DroEre_CAF1 14455 99 + 1
GUCGGAAUCAAUUGGACUUCAUAACUACUUUGUAGGAAAGUCUGAAGCUGAUCAUUGUUUGCAGUGCCAAGGUUAAUCAGUUAAUUGAUCGAGUACUUA
.(((..(((((((((((((.....((((...))))..))))))..((((((((((((....))))).........)))))))))))))))))....... ( -21.80)
>DroYak_CAF1 14719 99 + 1
GUUGGAAUCAAUUGGACUUCAUAACUACUUUGUAGGAAAGUCUGAAGUUGAUCAUUGUUUGCAGUGCCAAGGUUAAUCAGUUGAUUGAUCGAAUACUUA
.((((.(((((((((((((.....((((...))))..))))))..)))))))(((((....)))))))))((((((((....))))))))......... ( -25.40)
>consensus
GUCGGAAUCAAUUGGACUUCAUAACUACUUUGUAGGAAAGUCUGAAGUUGAUCAUUGUUUGCAGUGCCAAGGUUAAUCAGUUGAUUGAUUUAAUACUUA
...((.(((((((((((((..(.((......)).)..))))))..)))))))(((((....)))))))..((((((((....))))))))......... (-19.98 = -20.14 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:32 2006