Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,396,959 – 2,397,096 |
Length | 137 |
Max. P | 0.990993 |
Location | 2,396,959 – 2,397,062 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 93.45 |
Mean single sequence MFE | -27.84 |
Consensus MFE | -22.24 |
Energy contribution | -21.96 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.12 |
Mean z-score | -1.46 |
Structure conservation index | 0.80 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.561259 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2396959 103 + 27905053 UCGCGUGCACAUUACUUUGCUCACUUGUGUGCUUAGCCUGCUUACC--GCACUGGCGUCCUGGCCAUGUUUGCCCAGAUGCAACUAAGCUUUAUUUGCCUAUUUA ..(((.(((((..............)))))((((((..(((.....--)))...(((((.(((.((....)).))))))))..))))))......)))....... ( -25.04) >DroSec_CAF1 110186 103 + 1 CCGCCUGCACAUUACUUUGCUCAUUUGUGUGCUUAGCCUGCUCAGC--GCACUGGCGUCCUGGCCAUGUUUGCCCAGAUGCAACUAAGCUUUAUUUGCCUGUUUA .((((.(((........)))......(((((((.((....)).)))--)))).))))..((((.((....)).))))..((((.((.....)).))))....... ( -27.60) >DroSim_CAF1 102228 103 + 1 CCGCCUGCACAUUACUUUGCUCAUUUGUGUGCUUAGCCUGCUCAGC--GCACUGGCGUCCUGGCCAUGUUUGCCCAGAUGCAACUAAGCUUUAUUUGCCUGUUUA .((((.(((........)))......(((((((.((....)).)))--)))).))))..((((.((....)).))))..((((.((.....)).))))....... ( -27.60) >DroEre_CAF1 103675 103 + 1 CCGCCUGCACAUUACUUUGCUCAUUUGUGUGCUUAGCCUGCUCAGC--GCACUGGCGUUCUGGCCAGGUUUGCCCAGAUGCAACUAAGCUUUAUUUGCCUGUUUA .((((.(((........)))......(((((((.((....)).)))--)))).)))).(((((.(......).))))).((((.((.....)).))))....... ( -27.70) >DroYak_CAF1 98070 105 + 1 CUGCCUGCAUAUUACUUUGCUCAUUUGUGCGCUUAGCCUGCUCAGUGUGCACUGGCGUUUUGGCCAGGUUUGCACAGAUGCAACUAAGCUUUAUUUGCCUGUUUA ..((..(((((..............)))))((((((..(((((..(((((((((((......)))))...)))))))).))).)))))).......))....... ( -31.24) >consensus CCGCCUGCACAUUACUUUGCUCAUUUGUGUGCUUAGCCUGCUCAGC__GCACUGGCGUCCUGGCCAUGUUUGCCCAGAUGCAACUAAGCUUUAUUUGCCUGUUUA ..((..(((((..............)))))((((((..(((.......)))...((((.((((.((....)).))))))))..)))))).......))....... (-22.24 = -21.96 + -0.28)
Location | 2,396,959 – 2,397,062 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 93.45 |
Mean single sequence MFE | -32.72 |
Consensus MFE | -26.08 |
Energy contribution | -26.48 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.07 |
Mean z-score | -2.83 |
Structure conservation index | 0.80 |
SVM decision value | 2.24 |
SVM RNA-class probability | 0.990993 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2396959 103 - 27905053 UAAAUAGGCAAAUAAAGCUUAGUUGCAUCUGGGCAAACAUGGCCAGGACGCCAGUGC--GGUAAGCAGGCUAAGCACACAAGUGAGCAAAGUAAUGUGCACGCGA .......((.......((((((((((.(((((.((....)).))))).(((....))--)....))).)))))))......(((.(((......))).))))).. ( -32.20) >DroSec_CAF1 110186 103 - 1 UAAACAGGCAAAUAAAGCUUAGUUGCAUCUGGGCAAACAUGGCCAGGACGCCAGUGC--GCUGAGCAGGCUAAGCACACAAAUGAGCAAAGUAAUGUGCAGGCGG ..(((((((.......)))).)))...(((((.((....)).))))).((((.(((.--(((.((....)).))).)))......(((.(....).))).)))). ( -32.30) >DroSim_CAF1 102228 103 - 1 UAAACAGGCAAAUAAAGCUUAGUUGCAUCUGGGCAAACAUGGCCAGGACGCCAGUGC--GCUGAGCAGGCUAAGCACACAAAUGAGCAAAGUAAUGUGCAGGCGG ..(((((((.......)))).)))...(((((.((....)).))))).((((.(((.--(((.((....)).))).)))......(((.(....).))).)))). ( -32.30) >DroEre_CAF1 103675 103 - 1 UAAACAGGCAAAUAAAGCUUAGUUGCAUCUGGGCAAACCUGGCCAGAACGCCAGUGC--GCUGAGCAGGCUAAGCACACAAAUGAGCAAAGUAAUGUGCAGGCGG ..(((((((.......)))).)))...(((((.((....)).))))).((((.(((.--(((.((....)).))).)))......(((.(....).))).)))). ( -33.40) >DroYak_CAF1 98070 105 - 1 UAAACAGGCAAAUAAAGCUUAGUUGCAUCUGUGCAAACCUGGCCAAAACGCCAGUGCACACUGAGCAGGCUAAGCGCACAAAUGAGCAAAGUAAUAUGCAGGCAG .......((.......((((((((((.((((((((...(((((......)))))))))))..))))).)))))))..........(((.(....).)))..)).. ( -33.40) >consensus UAAACAGGCAAAUAAAGCUUAGUUGCAUCUGGGCAAACAUGGCCAGGACGCCAGUGC__GCUGAGCAGGCUAAGCACACAAAUGAGCAAAGUAAUGUGCAGGCGG .......((.......((((((((...(((((.((....)).)))))..((((((....)))).)).))))))))..........(((.(....).)))..)).. (-26.08 = -26.48 + 0.40)
Location | 2,396,997 – 2,397,096 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 91.78 |
Mean single sequence MFE | -29.82 |
Consensus MFE | -24.98 |
Energy contribution | -24.94 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.10 |
Mean z-score | -1.30 |
Structure conservation index | 0.84 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.574376 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2396997 99 + 27905053 UGCUUACC--GCACUGGCGUCCUGGCCAUGUUUGCCCAGAUGCAACUAAGCUUUAUUUGCCUAUUUACCCCGGUACGGAAAAUAGAGAUCAAGUCAACUGC (((.....--)))...(((((.(((.((....)).)))))))).(((...((((((((.((....(((....))).)).))))))))....)))....... ( -21.60) >DroSec_CAF1 110224 99 + 1 UGCUCAGC--GCACUGGCGUCCUGGCCAUGUUUGCCCAGAUGCAACUAAGCUUUAUUUGCCUGUUUACCACGGCACGGCAAAUAGAGAUCAAGUCAACUGC ....(((.--..(((.(((((.(((.((....)).)))))))).......(((((((((((((((......)))).)))))))))))....)))...))). ( -29.80) >DroSim_CAF1 102266 99 + 1 UGCUCAGC--GCACUGGCGUCCUGGCCAUGUUUGCCCAGAUGCAACUAAGCUUUAUUUGCCUGUUUACCCCGGCACGGCAAAUAGAGAUCAAGUCAACUGC ....(((.--..(((.(((((.(((.((....)).)))))))).......(((((((((((((((......)))).)))))))))))....)))...))). ( -29.80) >DroEre_CAF1 103713 99 + 1 UGCUCAGC--GCACUGGCGUUCUGGCCAGGUUUGCCCAGAUGCAACUAAGCUUUAUUUGCCUGUUUACCCUGGCAGCGCAAAUAGGGAUCCAGUCAACUGC ....(((.--..((((((((.((((.(......).)))))))).......(((((((((((((((......))))).))))))))))...))))...))). ( -31.70) >DroYak_CAF1 98108 101 + 1 UGCUCAGUGUGCACUGGCGUUUUGGCCAGGUUUGCACAGAUGCAACUAAGCUUUAUUUGCCUGUUUACCCUGGCACGGCAAAUAGAGAUCAAGUCAAGUGC (((((..(((((((((((......)))))...)))))))).)))(((...(((((((((((((((......)))).)))))))))))....)))....... ( -36.20) >consensus UGCUCAGC__GCACUGGCGUCCUGGCCAUGUUUGCCCAGAUGCAACUAAGCUUUAUUUGCCUGUUUACCCCGGCACGGCAAAUAGAGAUCAAGUCAACUGC ..........(((...((((.((((.((....)).)))))))).(((...(((((((((((((((......)))).)))))))))))....)))....))) (-24.98 = -24.94 + -0.04)
Location | 2,396,997 – 2,397,096 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 91.78 |
Mean single sequence MFE | -31.88 |
Consensus MFE | -25.64 |
Energy contribution | -25.76 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.11 |
Mean z-score | -1.50 |
Structure conservation index | 0.80 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.680429 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2396997 99 - 27905053 GCAGUUGACUUGAUCUCUAUUUUCCGUACCGGGGUAAAUAGGCAAAUAAAGCUUAGUUGCAUCUGGGCAAACAUGGCCAGGACGCCAGUGC--GGUAAGCA ((((....)).............((((((.((.((((.(((((.......))))).)))).(((((.((....)).)))))...)).))))--))...)). ( -28.50) >DroSec_CAF1 110224 99 - 1 GCAGUUGACUUGAUCUCUAUUUGCCGUGCCGUGGUAAACAGGCAAAUAAAGCUUAGUUGCAUCUGGGCAAACAUGGCCAGGACGCCAGUGC--GCUGAGCA .................((((((((.(((....)))....))))))))..(((((((.((.(((((.((....)).)))))((....))))--))))))). ( -32.70) >DroSim_CAF1 102266 99 - 1 GCAGUUGACUUGAUCUCUAUUUGCCGUGCCGGGGUAAACAGGCAAAUAAAGCUUAGUUGCAUCUGGGCAAACAUGGCCAGGACGCCAGUGC--GCUGAGCA .................((((((((.(((....)))....))))))))..(((((((.((.(((((.((....)).)))))((....))))--))))))). ( -32.70) >DroEre_CAF1 103713 99 - 1 GCAGUUGACUGGAUCCCUAUUUGCGCUGCCAGGGUAAACAGGCAAAUAAAGCUUAGUUGCAUCUGGGCAAACCUGGCCAGAACGCCAGUGC--GCUGAGCA .(((....)))......(((((((.(((..........))))))))))..(((((((.((.(((((.((....)).)))))((....))))--))))))). ( -31.70) >DroYak_CAF1 98108 101 - 1 GCACUUGACUUGAUCUCUAUUUGCCGUGCCAGGGUAAACAGGCAAAUAAAGCUUAGUUGCAUCUGUGCAAACCUGGCCAAAACGCCAGUGCACACUGAGCA .................((((((((.(((....)))....))))))))..(((((((.......(((((...(((((......))))))))))))))))). ( -33.81) >consensus GCAGUUGACUUGAUCUCUAUUUGCCGUGCCGGGGUAAACAGGCAAAUAAAGCUUAGUUGCAUCUGGGCAAACAUGGCCAGGACGCCAGUGC__GCUGAGCA .................((((((((.(((....)))....))))))))..((((((((((......))).((.((((......))))))....))))))). (-25.64 = -25.76 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:20 2006