Locus 6479

Sequence ID 3R_DroMel_CAF1
Location 17,044,428 – 17,044,542
Length 114
Max. P 0.927883
window10544

overview

Window 4

Location 17,044,428 – 17,044,542
Length 114
Sequences 3
Columns 118
Reading direction reverse
Mean pairwise identity 86.86
Mean single sequence MFE -29.50
Consensus MFE -24.77
Energy contribution -24.33
Covariance contribution -0.44
Combinations/Pair 1.13
Mean z-score -2.60
Structure conservation index 0.84
SVM decision value 1.19
SVM RNA-class probability 0.927883
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17044428 114 - 27905053
CCU----UAACGGCUUAAAUACCAUAGUAUUUUAUAUUCGUGCUCGAGGGUGCGGCCACACUGCACUACACGUGCAAUUGGAUUGGCAAAAACAAAGCCAAAAAGCCGAGUAAACAAU
...----...((((((((((((....))))))....(((.(((.((..(((((((.....)))))))...)).)))...)))(((((.........))))).)))))).......... ( -32.20)
>DroSim_CAF1 947 114 - 1
UCU----UAACGGCUAAAAUACCAUAGUAUUUUAUAUUCGUGCUCAAGGGUGCGGGCACACUGCACUACACGUGCAAUUGGAUUGGACAAAACAAAGCCAAAAAGCCGAGUAAACAAU
...----...((((((((((((....)))))))......((((((........))))))..(((((.....))))).((((.(((.......)))..))))..))))).......... ( -30.20)
>DroYak_CAF1 947 118 - 1
ACUUACUUACCGGUUAAAAUACCAUAGUAUUUUAAAUUCUUGCUUGAGAGUAAGGUCACAUUGCUCUACACGUGCAAUUGGAUUGGCCAAAACAAACCCAAACAGCCGAGUAAACAAU
......((((((((((((((((....)))))))).....((((.(((((((((.......))))))).))...))))((((.(((.......)))..))))...)))).))))..... ( -26.10)
>consensus
ACU____UAACGGCUAAAAUACCAUAGUAUUUUAUAUUCGUGCUCGAGGGUGCGGCCACACUGCACUACACGUGCAAUUGGAUUGGCCAAAACAAAGCCAAAAAGCCGAGUAAACAAU
..........((((((((((((....))))))))...(((((((....)))))))......(((((.....))))).((((.(((.......)))..))))...)))).......... (-24.77 = -24.33 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:23 2006