| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,039,309 – 17,039,429 |
| Length | 120 |
| Max. P | 0.772365 |
| Location | 17,039,309 – 17,039,429 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.51 |
| Mean single sequence MFE | -24.23 |
| Consensus MFE | -17.72 |
| Energy contribution | -19.17 |
| Covariance contribution | 1.45 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.772365 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17039309 120 + 27905053 AUUUGCCUUGCAUAACACUACAUGUCUUGUUAAGUUUAAGCCUUCUGGAUAUAAUAGAUAUUCUUAAAUAUUCAGGACAAUCAAGGGAAUGGAAGCUGUACAAUAAGACCUUAAGAAUUG ...(((...)))...........((((((((..((...(((.((((((((((...((.....))...))))))))))((.((....)).))...)))..))))))))))........... ( -20.40) >DroSec_CAF1 57551 102 + 1 AU-----------------GCAAGGCUUGUUGAGUUU-CGCCUUCUGGAUAUAAGAGAUAUUCUUAAAUAUUCAGAAGAAUCAAGGGAAUAGAAGCUGUACAAUAAGACCUUAAGAAUUG ..-----------------..((((((((((((((((-(..(((((((((((..(((.....)))..)))))))))))..((....))...))))))...))))))).))))........ ( -30.10) >DroSim_CAF1 59005 103 + 1 AU-----------------GCAUGUCUUGUUGAGUUAAAGCCUUCUGGAUAUAAGAGAUAUUCUUAAAUUUUCAGAAGAAUCAAGGGAAUAGAAGCUGUACAAUAAGACCUUAAGAAUUU ..-----------------....(((((((((......(((((((((((..((((((...))))))....))))))))..((....))......)))...)))))))))........... ( -22.20) >consensus AU_________________GCAUGUCUUGUUGAGUUUAAGCCUUCUGGAUAUAAGAGAUAUUCUUAAAUAUUCAGAAGAAUCAAGGGAAUAGAAGCUGUACAAUAAGACCUUAAGAAUUG .......................((((((((((((((...((((((((((((..(((.....)))..)))))))))........))).....)))))...)))))))))........... (-17.72 = -19.17 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:22 2006