Locus 6475

Sequence ID 3R_DroMel_CAF1
Location 17,036,721 – 17,036,827
Length 106
Max. P 0.884194
window10540

overview

Window 0

Location 17,036,721 – 17,036,827
Length 106
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 78.16
Mean single sequence MFE -32.38
Consensus MFE -23.31
Energy contribution -23.20
Covariance contribution -0.11
Combinations/Pair 1.17
Mean z-score -1.59
Structure conservation index 0.72
SVM decision value 0.93
SVM RNA-class probability 0.884194
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17036721 106 - 27905053
CAAUGCAAAUGUGGG--------UUUUCACUUACUCCGCCACGUGUCCAGUUUGUGCUCUUCCAGCUGCUCCAUGGACGCAUUUGGCGAUUUGUAAUACAUUUGCAGGAUCUUG
...((((((((((((--------(........))))(((((.(((((((....(((((.....))).))....)))))))...))))).........)))))))))........ ( -35.00)
>DroPse_CAF1 56542 105 - 1
CCACCUCAAGAUGUG--------U-UCUACUCACUCCGCCACGUGUCCAGUUUGUGCUCUUCGAGCUGCUCCAUGGAGGCGUUGGGCGACUUGUAAUACAUUUGCAGGAUCUUG
......(((((((((--------.-......)))..((((((((.((((....((((((...)))).))....)))).))))..)))).(((((((.....))))))))))))) ( -35.30)
>DroGri_CAF1 63774 108 - 1
GCAGGCA------GAUAUGCAAAUAAAUACUUACUGCGCCACGUGUCCAAUUUGUGCUCCUCCAGCUGCUCCAUGGACGCAUUGGGUGACUUAUAAUACAUUUGCAAGAUCUUG
......(------(((.(((((((............((((..(((((((....(((((.....))).))....)))))))....))))...........)))))))..)))).. ( -26.40)
>DroMoj_CAF1 65356 112 - 1
GCAGGCGAGUA-AUAUGGCUA-AUGUAUACUGACUGCGCCACGUGUCCAGUUUGUGCUCCUCCAGCUGCUCCAUGGACGCGUUGGGUGACUUAUAAUACAUUUGCAAGAUCUUU
((((((.(...-...).)))(-((((((..(((...(((((((((((((....(((((.....))).))....)))))))))..))))..)))..))))))))))......... ( -32.90)
>DroAna_CAF1 57826 101 - 1
GAAAGCAUUA--GUG--------UAU---CUUACUUCGCCACGUGUCCAGUUUGUGCUCUUCCAGCUGCUCCAUGGACGAAUUGGGCGAUUUGUAGUACAUCUGCAGGAUCUUG
....(((...--(((--------(((---..((..(((((...((((((....(((((.....))).))....)))))).....)))))..))..)))))).)))......... ( -30.10)
>DroPer_CAF1 56451 105 - 1
CCACCUCAAGAUGUG--------U-UCUACUUACUCCGCCACGUGUCCAGUUUGUGCUCUUCGAGCUGCUCCAUGGAGGCGUUGGGCGACUUGUAAUACAUUUGCAGGAUCUUG
......((((((...--------.-...........((((((((.((((....((((((...)))).))....)))).))))..)))).(((((((.....))))))))))))) ( -34.60)
>consensus
CCACGCAAAGA_GUG________U_UAUACUUACUCCGCCACGUGUCCAGUUUGUGCUCUUCCAGCUGCUCCAUGGACGCAUUGGGCGACUUGUAAUACAUUUGCAGGAUCUUG
....................................((((..(((((((....(((((.....))).))....)))))))....)))).(((((((.....)))))))...... (-23.31 = -23.20 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:19 2006