| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,036,486 – 17,036,601 |
| Length | 115 |
| Max. P | 0.566884 |
| Location | 17,036,486 – 17,036,601 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 82.67 |
| Mean single sequence MFE | -29.20 |
| Consensus MFE | -22.90 |
| Energy contribution | -22.48 |
| Covariance contribution | -0.41 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.566884 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17036486 115 - 27905053 UCGAAGACAACCAACUUGGCGGAGGUGGGUAUCAGAUCAUAGCACUUGUGAAAACGAAAGAACUUCACGAAGAUCUGUGAGUCGUCCUCUUCUGCAGAAA-UA--AGAAGAGA-AGUCG .(((.(((.(((.((((.....)))).)))....((((((((..((((((((..(....)...))))).)))..)))))).)))))(((((((..(....-).--))))))).-..))) ( -31.70) >DroVir_CAF1 78593 119 - 1 UCGAAGACGACCAGUUUUGCGGAGGUGGGUAUCAGAUCGUAACUCUUGUGGAAACGAAAGAACUUGACAAAGAUCUGUGAGUCGUCCUCCUCUGAAAAUGAUAAAAGAGAGCACAGUGU ...(((((.....)))))((((((((((.(..((((((.(((.((((.((....)).))))..))).....))))))..).))).)))))(((............)))..))....... ( -27.60) >DroGri_CAF1 63543 111 - 1 UCAAAGACGACCAAUUUGGCGGAGGUGGGUAUCAGAUCAUAGCUCUUGUGGAAACGAAAGAACUUCACAAAGAUCUGUGAAUCAUCCUCCUCUGCAAGGCACA--AGAAAACA------ ..................(((((((.((((....((((((((.(((((((((..(....)...))))).)))).))))).))))))).)))))))........--........------ ( -33.80) >DroWil_CAF1 72413 116 - 1 UCAAAGACAACCAGUUUAGCGGAGGUGGGUAUUAGAUCAUAGCACUUGUGAAAACGAAAGAACUUGACAAAGAUCUGUGAGUCGUCCUCCUCUGUAAAUAUCA--AAAAAACC-AAAAU ....((((.....)))).(((((((.(((.....((((((((...((((.((..(....)...)).))))....)))))).)).))).)))))))........--........-..... ( -24.70) >DroMoj_CAF1 65120 116 - 1 UCGAAGACGACCAAUUUAGCGGAGGUGGGUAUCAGAUCAUAGCACUUGUGAAAACGAAAGAACUUGACAAAGAUCUGUGAAUCGUCCUCCUCUGCAAAGUAGAAAGGAAAGCA---UGU (((....)))...((((.(((((((.(((.....((((((((...((((.((..(....)...)).))))....))))).))).))).))))))).)))).............---... ( -27.20) >DroAna_CAF1 57592 114 - 1 UCGAAGACGACCAGCUUGGCGGAGGUGGGUAUCAGAUCAUAGCACUUGUGAAAACGAAAGAACUUUACAAAGAUCUGUGAGUCGUCCUCCUCUGUA-AAG-UA--AGAAAAUA-UCCAC (((....)))...((((.(((((((.(((.....((((((((...(((((((..(....)...)))))))....)))))).)).))).))))))).-)))-).--........-..... ( -30.20) >consensus UCGAAGACGACCAAUUUGGCGGAGGUGGGUAUCAGAUCAUAGCACUUGUGAAAACGAAAGAACUUGACAAAGAUCUGUGAGUCGUCCUCCUCUGCAAAAAAUA__AGAAAACA_A_UAU ..................(((((((.(((...((((((...((....)).....(....)...........)))))).......))).)))))))........................ (-22.90 = -22.48 + -0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:17 2006