Locus 6473

Sequence ID 3R_DroMel_CAF1
Location 17,032,933 – 17,033,026
Length 93
Max. P 0.963257
window10538

overview

Window 8

Location 17,032,933 – 17,033,026
Length 93
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 78.69
Mean single sequence MFE -22.96
Consensus MFE -14.26
Energy contribution -14.74
Covariance contribution 0.48
Combinations/Pair 1.11
Mean z-score -2.29
Structure conservation index 0.62
SVM decision value 1.55
SVM RNA-class probability 0.963257
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17032933 93 + 27905053
AGUGCUAAG----------ACA--UCGUAACUUAAGGUGUAAGUUAUACUACGCCACAAAUAACUUGCAUAACGAUUAACGAACGUAUAAGUAUAUGUUUGUACA
.((((....----------..(--((((..(....)(((((((((((............))))))))))).)))))....((((((((....)))))))))))). ( -20.90)
>DroSec_CAF1 51215 94 + 1
AGUGCUAAGUAA-----AGUAA--UAAUACUUUAAGGUGUAAGUUAUACUGCGCCACAAAUACG----AUAACGAUUAACGAACGUAUAAGUAUAUGUUUGUACA
.(((.....(((-----((((.--...))))))).((((((........)))))).....))).----..........((((((((((....))))))))))... ( -20.80)
>DroSim_CAF1 52679 98 + 1
AGUGCUAAGUAA-----AGUAA--UAAUAACUUAAGGUGUAAGUUAGACUACGCCACAAAUACCUUGCAUAACGAUUAACGAACGUAUAAGUAUAUGUUUGUACA
.((((...((((-----(((..--.....))))..((((((........)))))).....)))...))))........((((((((((....))))))))))... ( -22.00)
>DroEre_CAF1 52056 103 + 1
AGUACUGGGGAAUCGUAAGUUA--UGGCAAGGCAAGGUGUAAAUUACACUACGCCAGAAAUACCUUGCAUAACGAUUAACGAACGUAUAAGUAUAUGCAUGUACA
.((((.......((((..((((--((.(((((...((((((........))))))(....).))))))))))).....))))..(((((....)))))..)))). ( -28.50)
>DroYak_CAF1 54254 105 + 1
AGUGCUAAGGAAUCGUAUCUGAACUUGCAAAGCGAGGUGUAAGUUCCACUACGCCUGAAAUACCGUGCAUAACGAUUAACGAACGUAUAAAUAUUUGUAUGUACA
.(((...(((...((((...(((((((((........)))))))))...)))))))....))).(((((((.(((...................)))))))))). ( -22.61)
>consensus
AGUGCUAAGGAA_____AGUAA__UAGUAACUUAAGGUGUAAGUUACACUACGCCACAAAUACCUUGCAUAACGAUUAACGAACGUAUAAGUAUAUGUUUGUACA
.((((..............................((((((........)))))).........................((((((((....)))))))))))). (-14.26 = -14.74 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:16 2006