Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 17,031,296 – 17,031,410 |
Length | 114 |
Max. P | 0.805381 |
Location | 17,031,296 – 17,031,410 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 82.22 |
Mean single sequence MFE | -36.71 |
Consensus MFE | -25.33 |
Energy contribution | -27.03 |
Covariance contribution | 1.70 |
Combinations/Pair | 1.17 |
Mean z-score | -2.30 |
Structure conservation index | 0.69 |
SVM decision value | 0.63 |
SVM RNA-class probability | 0.805381 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17031296 114 + 27905053 -GCAUACCAAGCCUCCCAAGCCUGCCAAGCGGCAAAAACAA---GACGAAAGAUGGCAAAAAGCUGAAGGCAACUUUAACGGCGGCCAUGUCAUCGUCGCUGCUGCGACGCAAGGCGC -..................((((((...((((((.......---(((((.(.(((((.....(((((((....)))...)))).))))).)..)))))..))))))...)).)))).. ( -39.20) >DroSec_CAF1 49622 114 + 1 -GCAUCCCAAGCCUCCCAAGCCUGCCAAGCGGCAAAAACAA---GGCGAAAGAUGGCAAGAAGCUGAAGGCAACUUUAACGGCAGCCAUGUCGUCGUCUCUGCUACGACGCAAGGCGC -((.......(((......(((((((....)))).......---..(....)..))).....(.(((((....))))).)))).(((.((.((((((.......)))))))).))))) ( -37.80) >DroSim_CAF1 51064 105 + 1 -GCAUCCCA---------AGCCUGCCAAGCGGCAAAAACAA---GGCGAAAGAUGGCAAGAAGCUGAAGGCAACUUUAACGGCGGCCAUGUCGUCGUCUCUGCUGCGACGCAAGGCGC -........---------.((((((...((((((.......---(((((...(((((.....(((((((....)))...)))).))))).))))).....))))))...)).)))).. ( -40.00) >DroEre_CAF1 50430 114 + 1 -GCAACCAAAGCAUCCUAAGCCUGCCAAGCGGCAAAAACAA---GGCGAAAGAUGGCAAGAAGCUGAAGGCAACUUUAACGGCGGCCAUGUCAUCGUCGCUACUGCGACGCAAGGCGC -((.......)).......(((((((....)))........---.((....(((((((.(..(((((((....)))...))))...).)))))))(((((....))))))).)))).. ( -39.70) >DroWil_CAF1 66122 100 + 1 AACAU---U---------AGC------AAUGGCAAAACUAAACAGCAAAAAGAUUGCAAAAAGUUGACGGCAACUUUAACAGCGGCCAUGUCGUCGUCAUUGUUGCGUCGCAAGGCCC .....---(---------(((------((((((..((((.....((((.....))))....))))(((((((................))))))))))))))))).(((....))).. ( -27.89) >DroYak_CAF1 52574 114 + 1 -GCAAUCAAAGCAUCCUAAGCCUGCCAAACGGCAAAAACAA---GGCGAAAGAAGGCAAGAAGCUGAAGGCAACUUUAACGGCGGCCAUGUCAUCGUCGCUGCUGCGACGCAAGGCGC -((.......)).......((((((.....((((.......---..(....)..(((.....(((((((....)))...)))).))).))))...(((((....))))))).)))).. ( -35.70) >consensus _GCAUCCCAAGC_UCC_AAGCCUGCCAAGCGGCAAAAACAA___GGCGAAAGAUGGCAAGAAGCUGAAGGCAACUUUAACGGCGGCCAUGUCAUCGUCGCUGCUGCGACGCAAGGCGC ...................((((((...((((((..........(((((.(.(((((.....(((((((....)))...)))).))))).)..)))))..))))))...)).)))).. (-25.33 = -27.03 + 1.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:15 2006