Locus 6471

Sequence ID 3R_DroMel_CAF1
Location 17,027,400 – 17,027,493
Length 93
Max. P 0.762171
window10536

overview

Window 6

Location 17,027,400 – 17,027,493
Length 93
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 82.95
Mean single sequence MFE -39.20
Consensus MFE -28.04
Energy contribution -30.02
Covariance contribution 1.98
Combinations/Pair 1.21
Mean z-score -2.26
Structure conservation index 0.72
SVM decision value 0.51
SVM RNA-class probability 0.762171
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17027400 93 - 27905053
GAGAUCGUGUGGGAAGUAGCCGCCUCCACCGACGGGUGCGGUGGGCGGGGGAGAGCCGAAGUCCGGACCUGCACUGCGACGCAUGCUCUAAAA
.(((.((((((....(((((((((..((((....)))).)))))(((((......(((.....))).))))).))))..)))))).))).... ( -38.60)
>DroGri_CAF1 54147 84 - 1
GAGAUCGUGUGGAAAGUAACCGCC-----CGAUGGUUGCG-UUGGUGGCGGCGAACCAAAGUCGGGA---GCGCCACGCCGCAUGCUCUGCAA
.(((.(((((((...(((((((..-----...))))))).-...((((((.(...((......))..---))))))).))))))).))).... ( -34.50)
>DroSec_CAF1 45871 93 - 1
GAGAUCGUGUGGGAAGUAACCGCCUCCACCGACGGGUGCGGUGGGCGGUGGAGAGCCGAAGUCCGGACCUGCACUGCGACGCAUGCUCUAAAA
.(((.((((((........(((((..((((....)))).)))))((((((.((..(((.....)))..)).))))))..)))))).))).... ( -41.80)
>DroSim_CAF1 47283 93 - 1
GAGAUCGUGUGGGAAGUAACCGCCUCCACCGACGGGUGCGGUGGGCGGUGGAGAGCCGAAGUCCGGACCUGCACUGCGACGCAUGCUCUAAAA
.(((.((((((........(((((..((((....)))).)))))((((((.((..(((.....)))..)).))))))..)))))).))).... ( -41.80)
>DroWil_CAF1 62409 84 - 1
GAGAUCGUGUGGAAAGUAACC------ACCCACUGGGGCAGUGGGUGGCGGUGAGCCAAAAUCUGG---UGCACCGCGACGCAUGCUCUGUAA
.(((.((((((.........(------((((((((...)))))))))((((((.((((.....)))---).))))))..)))))).))).... ( -42.10)
>DroYak_CAF1 48807 93 - 1
GAGAUCGUGUGGAAAGUAACCUCCUCCACCUAUGGGUGCGGUGGGCGGUGGAGAGCCGAAGUCUGGACCUGCACUGCGACGCAUGCUCUAAAA
.(((.((((((........((.((..((((....)))).)).))((((((.((..(((.....)))..)).))))))..)))))).))).... ( -36.40)
>consensus
GAGAUCGUGUGGAAAGUAACCGCCUCCACCGACGGGUGCGGUGGGCGGUGGAGAGCCGAAGUCCGGACCUGCACUGCGACGCAUGCUCUAAAA
.(((.((((((........(((((..((((....)))).)))))((((((.((..(((.....)))..)).))))))..)))))).))).... (-28.04 = -30.02 +   1.98)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:14 2006