Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 17,021,912 – 17,022,016 |
Length | 104 |
Max. P | 0.933580 |
Location | 17,021,912 – 17,022,016 |
---|---|
Length | 104 |
Sequences | 3 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 74.83 |
Mean single sequence MFE | -18.80 |
Consensus MFE | -10.52 |
Energy contribution | -11.63 |
Covariance contribution | 1.11 |
Combinations/Pair | 1.05 |
Mean z-score | -2.20 |
Structure conservation index | 0.56 |
SVM decision value | 1.23 |
SVM RNA-class probability | 0.933580 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17021912 104 + 27905053 AACUAUAUAACUUAUUUUAACUAUAUACAUUAUAUAUACUAUAUAAACUAUAUAGUCGGAUAUGUAGAACUUCUUACGGUAGA-GUCAGUGGAAUGA-UGACUCAC ..(((((((......((..((((((((..(((((((...)))))))..))))))))..)))))))))..............((-((((.........-)))))).. ( -22.10) >DroSec_CAF1 40086 82 + 1 ----------------------AUAUACUAUAUAUAUACUAUAUAAACUAUCUAGUCGGAUAUGUAGAACUUCUUAUGGAGGAACUCACUGGAAUGACUGACU--C ----------------------.....((((((((..((((.(((...))).))))...))))))))..((((....))))......................--. ( -11.50) >DroSim_CAF1 41559 82 + 1 ----------------------ACAUACUAUAUAUCUACUAUAUAAACUAUAUAGUCGGAUAUGUAGAACUUCUUAUGGAGGAACUCAGUGGAAUGACUCACU--C ----------------------.....((((((((((((((((((...)))))))).))))))))))..((((....))))......(((((......)))))--. ( -22.80) >consensus ______________________AUAUACUAUAUAUAUACUAUAUAAACUAUAUAGUCGGAUAUGUAGAACUUCUUAUGGAGGAACUCAGUGGAAUGACUGACU__C ...........................((((((((..((((((((...))))))))...))))))))..((((.....))))........................ (-10.52 = -11.63 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:13 2006