Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,393,446 – 2,393,540 |
Length | 94 |
Max. P | 0.570411 |
Location | 2,393,446 – 2,393,540 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.82 |
Mean single sequence MFE | -27.81 |
Consensus MFE | -15.63 |
Energy contribution | -15.47 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.35 |
Mean z-score | -2.17 |
Structure conservation index | 0.56 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.570411 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2393446 94 - 27905053 ---CACAUGUG------------CCAC-------U--GCGAGUGAGUGUGCGUGCUUAUGCAGAUGAGUUGCCAGUAACGUGUGGAAAAUUAUGAAGAUAAAUUUGUG--UUUGUCUUUU ---(((((((.------------..((-------(--((((.(..((.(((((....))))).)).).))).)))).))))))).........((((((((((....)--))))))))). ( -28.50) >DroGri_CAF1 167668 108 - 1 ACACACAUACU------------UGACUAUCUUAUAUGAAUAUGGGUGUGUGCCUUCAUGUAGAUGAGUUGACAGUAAUGUGCUGAAAAUUAUGAAGAUGAAUUUCUCUCUCUGUCUUCU .((((((((((------------..(((((((.((((((....((((....)))))))))))))).)))..)..)).))))).))........((((((((.........)).)))))). ( -24.70) >DroSim_CAF1 98692 94 - 1 ---CACAUGUG------------CCAC-------U--GCGAGUGAGUGUGCGUGCUUAUGCAGAUGAGUUGCCAGUAACGUGUGGAAAAUUAUGAAGAUAAAUUUGUG--UUUGUCUUUU ---(((((((.------------..((-------(--((((.(..((.(((((....))))).)).).))).)))).))))))).........((((((((((....)--))))))))). ( -28.50) >DroEre_CAF1 100297 94 - 1 ---CACAUGUG------------CCAC-------U--GCGAGUGAGUGUGCGUGCUUAUGCAGAUGAGUUGCCAGUAACGUGUGGAAAAUUAUGAAGAUAAAUUUGUG--UUUGUCUUUU ---(((((((.------------..((-------(--((((.(..((.(((((....))))).)).).))).)))).))))))).........((((((((((....)--))))))))). ( -28.50) >DroYak_CAF1 94638 94 - 1 ---CACAUGUG------------CCAC-------U--GCGAGUGAGUGUGCGUGCUUAUGCAGAUGAGUUGCCAGUAACGUGUGGAAAAUUAUGAAGAUAAAUUUGUG--UUUGUCUUUU ---(((((((.------------..((-------(--((((.(..((.(((((....))))).)).).))).)))).))))))).........((((((((((....)--))))))))). ( -28.50) >DroAna_CAF1 98261 104 - 1 ---CGCAUGUGUGUGUCUGUAUGCCA-----------GAGUGUGUGUGUGCGUGCUUAUGCAGAUGAGUUGCCAGUAACGUGUGGAAAAUUAUGAAGAUAAAUUUGUG--UUUGUCUUUU ---(((((((...(((((((((....-----------(((..(((....)))..))))))))))))...........))))))).........((((((((((....)--))))))))). ( -28.14) >consensus ___CACAUGUG____________CCAC_______U__GCGAGUGAGUGUGCGUGCUUAUGCAGAUGAGUUGCCAGUAACGUGUGGAAAAUUAUGAAGAUAAAUUUGUG__UUUGUCUUUU ...(((((((...............................((((((......))))))((((.....)))).....))))))).........(((((((((........))))))))). (-15.63 = -15.47 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:16 2006