| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,018,280 – 17,018,382 |
| Length | 102 |
| Max. P | 0.645077 |
| Location | 17,018,280 – 17,018,382 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 85.99 |
| Mean single sequence MFE | -23.05 |
| Consensus MFE | -18.20 |
| Energy contribution | -18.73 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.28 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.645077 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17018280 102 + 27905053 UCCUAUUUCACCAUUGCACCAUUAUGGCGACUUAAUAUUCUCGGUAAUUCGAGGACAUUUCUCUCCGUUAAUUGAGUUCACGCC----AGCGAACUUAAUGAGAUC ....(((((..............((((.((...(((.(((((((....))))))).)))..)).))))..(((((((((.(...----.).)))))))))))))). ( -24.00) >DroSec_CAF1 36709 102 + 1 UCCUAUUUCACCAUUUCACCAUUAUGGCGACUAAAUAUUCUCGGUAAUUCAAGGACAUUUCUUUCCGUUAAUUGAGUUCACGCC----AGCGAACUUAAUGAGAUC .......((.((((.........)))).))........((((..........(((........)))....(((((((((.(...----.).))))))))))))).. ( -19.80) >DroSim_CAF1 38079 102 + 1 UCCUAUUUCACCAUUUCACCAUUAUGGCGACUAAAUAUUCUCGGUAAUUCGAGGACAUUUCUCUCCGUUAAUUGAGUUCACGCC----AGCGAACUUAAUGAGAUC ............(((((......((((.((..((((.(((((((....))))))).)))).)).))))..(((((((((.(...----.).)))))))))))))). ( -24.30) >DroEre_CAF1 37164 94 + 1 UCCUAUUUCAC--------CAUUACGGCGACUAAAUAUUCUCGGUAAUUCGAGGACAUUUCUCUCAGUUAAUUGAGUUCACGCC----AGCGAACUUAAUGAGAUC .......((.(--------(.....)).))..((((.(((((((....))))))).)))).(((((.....((((((((.(...----.).))))))))))))).. ( -21.90) >DroYak_CAF1 38622 94 + 1 UCCUAUUUCAC--------CAUUACGGCGACUGAAUAUUCUCGGUAAUUCGAGGACAUUUCUCUCCGUUAAUUGAGUUCACGCC----AGCGAACUUAAUGAGAUC ....(((((..--------....((((.((..((((.(((((((....))))))).)))).)).))))..(((((((((.(...----.).)))))))))))))). ( -26.40) >DroAna_CAF1 41058 105 + 1 UCCUUUCUC-CCAUUUCCCCAUUAUUCGGACUAAGCGUUCUUGGUAAUUCGAGUCCAUUUCUCUCGCUUAAUUGCAUUCACGCCGAACGGCGAGCUUAAUGAGGUC .((((....-.....(((.........))).(((((.......((((((((((.........))))...)))))).....((((....)))).)))))..)))).. ( -21.90) >consensus UCCUAUUUCACCAUUUCACCAUUAUGGCGACUAAAUAUUCUCGGUAAUUCGAGGACAUUUCUCUCCGUUAAUUGAGUUCACGCC____AGCGAACUUAAUGAGAUC ....(((((..............((((.((..((((.(((((((....))))))).)))).)).))))..(((((((((.(........).)))))))))))))). (-18.20 = -18.73 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:11 2006