Locus 6467

Sequence ID 3R_DroMel_CAF1
Location 17,017,287 – 17,017,392
Length 105
Max. P 0.633714
window10532

overview

Window 2

Location 17,017,287 – 17,017,392
Length 105
Sequences 3
Columns 119
Reading direction forward
Mean pairwise identity 80.76
Mean single sequence MFE -17.47
Consensus MFE -10.59
Energy contribution -10.37
Covariance contribution -0.22
Combinations/Pair 1.08
Mean z-score -2.03
Structure conservation index 0.61
SVM decision value 0.21
SVM RNA-class probability 0.633714
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17017287 105 + 27905053
ACUUGAACAAUGCCCAA------GUUGGUUUUCAUUCAUAAUCA--------AAAGUGCACAUUUGCAAGUAUGCACAUAUGCAUAUGCAAAUAGGAAGAAGUAAAAAUUUCCGAAAUC
..........(((.(..------.((((((.........)))))--------)..).))).(((((((..((((((....))))))))))))).(((((.........)))))...... ( -18.80)
>DroSec_CAF1 35781 119 + 1
UCUUAAACAAUACCCAACAAUAAUUAUGUUUUCAUUCAUAAUUAAUGCACAUCAAAUGCACAUUUGCAAAUAUGCACAAAUGUAUAUGCAAAUACAAAUUAGUAAAAAUUUCCGAAAUC
..........(((.......((((((((........)))))))).((((.......)))).(((((((..((((((....)))))))))))))........)))............... ( -17.10)
>DroSim_CAF1 37118 105 + 1
UCUUGAAGAAUACCCAA------GUUUGUUUUCAUUCAUAAUCA--------UAAAUGCACAUUUGCAAAUAUGCACAAAUGUAUAUGCAAAUGAAAAUAAGUAAAAAUUUCCGAAAUC
.((((.........)))------)((((((((((((........--------....((((....)))).(((((((....)))))))...))))))))))))................. ( -16.50)
>consensus
UCUUGAACAAUACCCAA______GUUUGUUUUCAUUCAUAAUCA________AAAAUGCACAUUUGCAAAUAUGCACAAAUGUAUAUGCAAAUAAAAAUAAGUAAAAAUUUCCGAAAUC
.............................................................(((((((..((((((....))))))))))))).......................... (-10.59 = -10.37 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:10 2006