Locus 6466

Sequence ID 3R_DroMel_CAF1
Location 17,011,242 – 17,011,336
Length 94
Max. P 0.587657
window10531

overview

Window 1

Location 17,011,242 – 17,011,336
Length 94
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 83.30
Mean single sequence MFE -23.40
Consensus MFE -17.70
Energy contribution -16.98
Covariance contribution -0.72
Combinations/Pair 1.24
Mean z-score -1.62
Structure conservation index 0.76
SVM decision value 0.11
SVM RNA-class probability 0.587657
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17011242 94 + 27905053
UAACUUAUUC-AUUUA---UUUC----CUUUACAGCGCGCGGCGGCGCAUCAGCAACAGUUGGCUGUGCAAAGUAAGUACGAA------AUAGAGUUUGCAAUUUAUU-
.(((((.(((-(((((---(((.----...((((((((((....))))..((((....))))))))))..))))))))..)))------...)))))...........- ( -22.50)
>DroSec_CAF1 29936 98 + 1
UAACUUAUUC-AUUUA---UUUCUUUACUUUACAGCGCGCGGCGGCGCAUCAGCAACAGUUGGCUGUGCAAAGUAAGUACGAA------AUAGAGUUUGCAAUUUAUU-
..........-.((((---(((((((((((((((((((((....))))..((((....))))))))))..)))))))...)))------)))))..............- ( -27.20)
>DroSim_CAF1 31081 98 + 1
UAACUUAUUC-AUUUA---UUUCUUUACUUUACAGCGCGCGGCGGCGCAUCAGCAACAGUUGGCUGUGCAAAGUAAGUACGAA------AUAGAGUUUGCAAUUUAUU-
..........-.((((---(((((((((((((((((((((....))))..((((....))))))))))..)))))))...)))------)))))..............- ( -27.20)
>DroEre_CAF1 30159 97 + 1
UAACUUAUUC-AUUUA---UUUCUUUCAUUUGCAGCGUGCGGCGGCGCAUCAACAACAGUUGGCUGUGCAAAGUAAGUACGAC------AUAGAGUUCG-CUAUUAUA-
..........-.....---..............(((((((.((.((((((((((....))))).)))))...))..))))(((------.....))).)-))......- ( -19.50)
>DroYak_CAF1 31995 97 + 1
AAACUUAUUC-AUUUA---UUUCUUCUAUUUACAGCGUGCGGCGGCGCAUCAACAACAGUUGGCUGUGCAAAGUAAGUACGAA------AUAGAGUUGC-AAUUUAUU-
..........-.((((---((((...(((((((.((.....)).((((((((((....))))).)))))...))))))).)))------))))).....-........- ( -23.30)
>DroPer_CAF1 30690 104 + 1
--AUUUAUUUGAUUUUUUCUAUCUU-UUUUUACAGCGCGCUGCGGCGCAUCAACAACAAUUGGCUGUACAAAGUAAGUAAAACGCUUAAAUAAACUCU--AAUUUAUAU
--.(((((((((..((((((..(((-(...((((((((((....))))..(((......))))))))).))))..)).))))...)))))))))....--......... ( -20.70)
>consensus
UAACUUAUUC_AUUUA___UUUCUUUACUUUACAGCGCGCGGCGGCGCAUCAACAACAGUUGGCUGUGCAAAGUAAGUACGAA______AUAGAGUUUG_AAUUUAUU_
..(((((((.....................((((((((((....))))..((((....))))))))))...)))))))............................... (-17.70 = -16.98 +  -0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:09 2006