| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,979,848 – 16,979,938 |
| Length | 90 |
| Max. P | 0.532184 |
| Location | 16,979,848 – 16,979,938 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 82.73 |
| Mean single sequence MFE | -24.05 |
| Consensus MFE | -17.79 |
| Energy contribution | -18.35 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.74 |
| SVM decision value | -0.00 |
| SVM RNA-class probability | 0.532184 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16979848 90 + 27905053 AUUUCUGCGCAGCC-------AGGCAAUCAACCAAAAAUAUCACACAUACGCCGCGUUGUCGCGUGGCGCUCAGUCAGCUGUUCAGCCCAC----------------ACCGCU ....(((.(((((.-------.((.......))................((((((((....))))))))........))))).))).....----------------...... ( -23.80) >DroSec_CAF1 6591 90 + 1 AUUUCUGCGCAGCC-------AGGCAAUCAACCAAAAAUAUCACACAUACGCCGCGUUGUCGCGUGGCGCUCAGUCAGCUGUUCAGCCCAC----------------ACCGCU ....(((.(((((.-------.((.......))................((((((((....))))))))........))))).))).....----------------...... ( -23.80) >DroSim_CAF1 6891 90 + 1 AUUUCUGCGCAGCC-------AGGCAAUCAACCAAAAAUAUCACACAUACGCCGCGUUGUCGCGUGGCGCUCAGUCAGCUGUUCAGCCCAC----------------ACCGCU ....(((.(((((.-------.((.......))................((((((((....))))))))........))))).))).....----------------...... ( -23.80) >DroEre_CAF1 6905 90 + 1 AAUUCUGAGCAGCC-------AGGCAAUCAACCAAAAAUAUCACACAUUCGCCGCGUUGCCGCGUGGCGCUCAGUCAGCUGUUCACCCCAC----------------ACCGCU .....((((((((.-------.((.......))................((((((((....))))))))........))))))))......----------------...... ( -25.00) >DroYak_CAF1 8274 89 + 1 AAUUCUGCGCAGCC-------AGGCAAUCAACCAAAUAUAUCACACAUACGCCACGUUGCCGCGUGGCGCUGAGUCAGCUGUUCACCCC-C----------------ACCGCU .....((.(((((.-------.((.......))................((((((((....))))))))........))))).))....-.----------------...... ( -21.70) >DroAna_CAF1 6625 111 + 1 AUUUGUCAAAAGACACAAAAAAGACAAUCAA--AGAAAUAUCACACAUACGCCGCGUUGUCGCGUGGCGCGAAGACAGCUGUUCAACCUUGCUCUCUUUCGCUGAGAACCCCU ...((((....))))............(((.--.................(((((((....)))))))(((((((.(((...........))).)).))))))))........ ( -26.20) >consensus AUUUCUGCGCAGCC_______AGGCAAUCAACCAAAAAUAUCACACAUACGCCGCGUUGUCGCGUGGCGCUCAGUCAGCUGUUCAGCCCAC________________ACCGCU .....((.(((((.........((.......))................((((((((....))))))))........))))).))............................ (-17.79 = -18.35 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:05 2006