Locus 6461

Sequence ID 3R_DroMel_CAF1
Location 16,976,115 – 16,976,220
Length 105
Max. P 0.615220
window10523

overview

Window 3

Location 16,976,115 – 16,976,220
Length 105
Sequences 3
Columns 105
Reading direction reverse
Mean pairwise identity 91.11
Mean single sequence MFE -19.72
Consensus MFE -17.27
Energy contribution -16.50
Covariance contribution -0.77
Combinations/Pair 1.14
Mean z-score -1.81
Structure conservation index 0.88
SVM decision value 0.17
SVM RNA-class probability 0.615220
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16976115 105 - 27905053
AAUCAAUGACAACAGCUCUACAAAAGAAACAUUUUUAAACAUCAAUACUAGAAUCAUCACAAUGGUGAUCACACGUGAUGUUCGAAGUGCUUGUUAUCACCAUGU
......(((.(((((((((.....))).....(((..(((((((......((.(((((.....))))))).....)))))))..))).)).)))).)))...... ( -20.10)
>DroSec_CAF1 3117 105 - 1
GAACAAUGAUAACAGCUCUACAAAAGAGACGUUUUCAAACAUCAAUACUACAGUUAUAACAAUGACGAUCACACGUGAUGUUCGAAGUGCUCAUUAUCACCAUGU
......((((((..(((((.....)))).)((((((.(((((((........(((((....))))).........))))))).)))).))...))))))...... ( -19.53)
>DroSim_CAF1 3143 105 - 1
GAACAAUGAUAACAGCUCUACAAAAGAGACGUUUUCAAACAUCAAUACUACAGUUAUAACAAUGACGAUCACACGUGAUGUUCGAAGUGCUCAUUAUCACCAUGU
......((((((..(((((.....)))).)((((((.(((((((........(((((....))))).........))))))).)))).))...))))))...... ( -19.53)
>consensus
GAACAAUGAUAACAGCUCUACAAAAGAGACGUUUUCAAACAUCAAUACUACAGUUAUAACAAUGACGAUCACACGUGAUGUUCGAAGUGCUCAUUAUCACCAUGU
......((((((.((((((.....))).....((((.(((((((........(((((....))))).........))))))).)))).)))..))))))...... (-17.27 = -16.50 +  -0.77)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:02 2006