| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,918,463 – 16,918,563 |
| Length | 100 |
| Max. P | 0.620038 |
| Location | 16,918,463 – 16,918,563 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 80.59 |
| Mean single sequence MFE | -28.73 |
| Consensus MFE | -16.06 |
| Energy contribution | -17.47 |
| Covariance contribution | 1.42 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.620038 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16918463 100 - 27905053 UAUCUAUGAUCCCAGACUUCAGUUUGAGGCAUUCCUUGGCACCCGGUCUUCCUCCUCGUCGUUUGGCCAUCGCCCAUUGCCUUCUUGGGCCAAGUUUGGU ...........((((((((......(((((......((((....((....)).....))))....))).))(((((.........))))).)))))))). ( -25.00) >DroSec_CAF1 6142 100 - 1 UAUCUAUGAUCCCAGACUUGAGUUUGAGGUAUUCCUUGGCACCCGGUCUUCCUCCUCGUCGUUUGGCCAUCGCCCAUUGCCUUCUUGGGCCAAGUUUGGU ...........(((((((((.(((..(((....)))..).))..((((................))))...(((((.........)))))))))))))). ( -28.99) >DroSim_CAF1 6189 100 - 1 UAUCUAUGAUCCCAGACUUGGGUUUGAGGUAUUCCUUGGCACCCGGUCUUCUUCCUCGUCGUUUGGCCAUCGCCCAUUGCCUUCUUGGGCCAAGUUUGGU ...........(((((((((((((..(((....)))..).))))((((................))))...(((((.........))))).)))))))). ( -33.29) >DroEre_CAF1 5242 94 - 1 UAUCUAUGAUUCCAGACUU------GAGGUAUUCCUUGCCACCCGGUCUUCCACCUCGUCGGUUGGCUAUCGCCCAUUGCCUUCUUGGGCCAAGUUUGGU ...........((((((((------((((....))).((((.((((............)))).))))....(((((.........)))))))))))))). ( -30.70) >DroYak_CAF1 6293 94 - 1 UAUCUAUGAUUCCAGACUU------GAGGUAUUCCUUGCCACCCGGUCUUCUUCCUAGUCGGUUGGCUAUCGCCCAUUGCCUUCUUGGGCCAAGUCUAGU .............((((((------((((....))).((((.((((.((.......)))))).))))....(((((.........))))))))))))... ( -29.70) >DroPer_CAF1 5442 92 - 1 -AUCGAUGA-------CUUUCAAAUGCAGCAGACCUGCCCUGCCCCUCUGCUUCUCCAUCGUCGGGCUAUUGCCCAUAGCCUUCUUGGGCAAGGUAUGGC -.(((((((-------.........(.((((((...((...))...)))))).)....)))))))(((((((((((.........))))))....))))) ( -24.72) >consensus UAUCUAUGAUCCCAGACUU__GUUUGAGGUAUUCCUUGCCACCCGGUCUUCCUCCUCGUCGUUUGGCCAUCGCCCAUUGCCUUCUUGGGCCAAGUUUGGU ...........((((((((......((((....)))).......((((................))))...(((((.........))))).)))))))). (-16.06 = -17.47 + 1.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:57 2006