Locus 6452

Sequence ID 3R_DroMel_CAF1
Location 16,902,848 – 16,902,968
Length 120
Max. P 0.500000
window10511

overview

Window 1

Location 16,902,848 – 16,902,968
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 83.44
Mean single sequence MFE -49.88
Consensus MFE -30.51
Energy contribution -31.35
Covariance contribution 0.84
Combinations/Pair 1.28
Mean z-score -2.26
Structure conservation index 0.61
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16902848 120 - 27905053
GCCAGCUCCAAGUACCUGUCGCCGGAGGAACGGCGUCAUCUGGCCCUCCAACUCAAGCUGACCGACCGCCAGGUGAAGACCUGGUUUCAGAACCGGCGCGCCAAGUGGCGACGAGCCAAU
....((((...........((((((.(((..((.(((....))))))))........((((......(((((((....))))))).))))..))))))((((....))))..)))).... ( -44.00)
>DroVir_CAF1 3501 120 - 1
UCCAGCUCAAAGUAUUUGUCGCCCGAGGAGCGACGGCAUUUGGCGCUGCAGCUGAAGCUGACGGAUCGCCAGGUGAAGACCUGGUUUCAGAAUCGUCGCGCCAAAUGGCGACGUGCCAAU
....((.(.........((((((....).)))))(.((((((((((...(((....)))(((((.(((((((((....)))))))....)).))))))))))))))).)...).)).... ( -51.10)
>DroGri_CAF1 4314 120 - 1
UCCAGCUCGAAAUAUCUGUCGCCGGAGGAGCGUCGCCAUUUGGCGCUGCAGCUGAAGCUGACGGAUCGCCAGGUGAAGACCUGGUUCCAGAAUCGUCGCGCCAAAUGGCGGCGCGCCAAC
(((.((..............)).)))((.(((((((((((((((((...(((....)))(((((.(((((((((....)))))))....)).)))))))))))))))))))))).))... ( -63.74)
>DroWil_CAF1 1043 120 - 1
GCCAGCUCCAAGUAUCUGUCGCCCGAGGAGCGUCGUCAUUUGGCAUUGCAAUUGAAACUAACUGAUCGUCAGGUGAAAACUUGGUUUCAAAAUCGUCGCGCCAAAUGGCGAAGAUCGAAU
....(((((.................))))).((((((((((((...((..(((((((((((((.....)))((....))))))))))))....))...))))))))))))......... ( -38.83)
>DroMoj_CAF1 3504 120 - 1
GCCAGCUCCAAGUACUUGUCGCCCGAGGAGCGCCGGCAUCUGGCGCUGCAGCUGAAGCUGACCGAUCGGCAGGUGAAGACCUGGUUUCAGAAUCGACGCGCCAAGUGGCGCCGGGCGAAU
..................(((((((.(.((((((((...)))))))).)..(((((((...((....))(((((....)))))))))))).......(((((....)))))))))))).. ( -54.60)
>DroAna_CAF1 5851 120 - 1
GCCAGCCACAAAUACCUGUCGCCCGAGGAACGCCGCCACCUGGCCCUCCAGCUGAAGCUGACCGACCGGCAGGUGAAGACGUGGUUCCAGAACCGAAGGGCCAAGUGGCGACGAGCCAAU
....((.(((......))).))....((..((.((((((.(((((((.(.(((..(.(((.((....))))).)..)).)..((((....))))).))))))).)))))).))..))... ( -47.00)
>consensus
GCCAGCUCCAAGUACCUGUCGCCCGAGGAGCGCCGCCAUCUGGCGCUGCAGCUGAAGCUGACCGAUCGCCAGGUGAAGACCUGGUUUCAGAAUCGUCGCGCCAAAUGGCGACGAGCCAAU
..........................((..((.((((((.((((((.((..(((((((((......)).(((((....))))))))))))....)).)))))).)))))).))..))... (-30.51 = -31.35 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:50 2006