Locus 6451

Sequence ID 3R_DroMel_CAF1
Location 16,902,199 – 16,902,360
Length 161
Max. P 0.932522
window10509 window10510

overview

Window 9

Location 16,902,199 – 16,902,289
Length 90
Sequences 3
Columns 90
Reading direction forward
Mean pairwise identity 95.19
Mean single sequence MFE -24.85
Consensus MFE -24.04
Energy contribution -23.93
Covariance contribution -0.11
Combinations/Pair 1.04
Mean z-score -2.15
Structure conservation index 0.97
SVM decision value 1.22
SVM RNA-class probability 0.932522
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16902199 90 + 27905053
GUUCAACGGUCUGUAUUUCCGCUUCCAGAAUUCAAUCAAGUCACGAUUUGCGUGGUCCAUGGAAGUAGGAAGUACCUAAUGAAAUAUUUA
.((((..((...(((((((((((((((....(((..(((((....)))))..)))....))))))).))))))))))..))))....... ( -25.60)
>DroSec_CAF1 2890 90 + 1
GUUCAACGGUCUGUAUUUCCGCUUCCAGAAAUCAAUCCAGUCACGAUUGGCCUGGUCCAUGGAAGUAGGAAGUACCUAAUGCAAUAUUUA
............(((((((((((((((...((((..(((((....)))))..))))...))))))).))))))))............... ( -27.70)
>DroSim_CAF1 2895 90 + 1
GUUCAACGGUCUGUAUUUCCGCUUCCAGAAUUCAAUCCAGUCACGAUUGGCCUGGUCCAUGAAAGUAGGAAGUACCUAAUGGAAUAUUUA
((((........((((((((((((.((....(((..(((((....)))))..)))....)).)))).))))))))......))))..... ( -21.24)
>consensus
GUUCAACGGUCUGUAUUUCCGCUUCCAGAAUUCAAUCCAGUCACGAUUGGCCUGGUCCAUGGAAGUAGGAAGUACCUAAUGAAAUAUUUA
......((....(((((((((((((((....(((..(((((....)))))..)))....))))))).))))))))....))......... (-24.04 = -23.93 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 0

Location 16,902,249 – 16,902,360
Length 111
Sequences 4
Columns 111
Reading direction forward
Mean pairwise identity 85.44
Mean single sequence MFE -28.13
Consensus MFE -19.45
Energy contribution -20.64
Covariance contribution 1.19
Combinations/Pair 1.08
Mean z-score -1.45
Structure conservation index 0.69
SVM decision value -0.04
SVM RNA-class probability 0.513695
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16902249 111 + 27905053
CGUGGUCCAUGGAAGUAGGAAGUACCUAAUGAAAUAUUUAUUUAAGUACAUACAAAAUCUUACCUUUCAGUACCAGAGCAAAUCGGUGGUGGAGCUAAAGCCGCCGGUCUU
..((((...(((((((((((.((((..(((((.....)))))...))))........))))).))))))..))))......(((((((((.........)))))))))... ( -27.10)
>DroSec_CAF1 2940 111 + 1
CCUGGUCCAUGGAAGUAGGAAGUACCUAAUGCAAUAUUUAUUUAAGUGCAUAAAAAAUCUUACCUUUCAGUACCAGAGCAAAUCGGUGGUAGAGCUGAAGCCGCCGGUCUU
.(((((...(((((((((((........(((((...((.....)).)))))......))))).))))))..))))).....(((((((((.........)))))))))... ( -31.14)
>DroSim_CAF1 2945 111 + 1
CCUGGUCCAUGAAAGUAGGAAGUACCUAAUGGAAUAUUUAUUUAAGUGCAUAAAAAAUCUUACCUUUCAGUACCAGAGCAAAUCGGUGGUGGAGCUGAAGCCGCCGGUCUU
.(((((...(((((((((((....((....))....(((((........)))))...))))).))))))..))))).....(((((((((.........)))))))))... ( -30.90)
>DroEre_CAF1 3195 98 + 1
C-UGCUCCAUAUAAUUAAGAUGUA----------UACUUGUUAGA--AUAUAUAACAUCUUACCUUUCAGUACCAGAGCAAAUCGGUGGUGGAGCUGAAGCCGCCGGUCUU
.-(((((..(((...(((((((((----------((..(......--)..))).)))))))).......)))...))))).(((((((((.........)))))))))... ( -23.40)
>consensus
CCUGGUCCAUGGAAGUAGGAAGUACCUAAUG_AAUAUUUAUUUAAGUACAUAAAAAAUCUUACCUUUCAGUACCAGAGCAAAUCGGUGGUGGAGCUGAAGCCGCCGGUCUU
.(((((...(((((((((((.....................................))))).))))))..))))).....(((((((((.........)))))))))... (-19.45 = -20.64 +   1.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:49 2006