Locus 6450

Sequence ID 3R_DroMel_CAF1
Location 16,899,398 – 16,899,490
Length 92
Max. P 0.988844
window10508

overview

Window 8

Location 16,899,398 – 16,899,490
Length 92
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 70.19
Mean single sequence MFE -23.55
Consensus MFE -10.88
Energy contribution -11.21
Covariance contribution 0.33
Combinations/Pair 1.11
Mean z-score -2.36
Structure conservation index 0.46
SVM decision value 2.14
SVM RNA-class probability 0.988844
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16899398 92 + 27905053
-------UAUUGUUCA-CUACUUAGCAUUUGUAAUCUGAAAGCUUUGGCUCCGCCCACAAACCCUUGACUGCAACUUCAAGGGGAGGAGUCUAGUCAUUU
-------.....((((-.(((.........)))...)))).(((..((((((.........(((((((........)))))))..)))))).)))..... ( -20.50)
>DroPse_CAF1 5811 97 + 1
CUAUUCCUAUUCUAUUUUUACCAAUCAUUAGAGACUCGGAAU-UUUUGCUCCUCCUACAACCCCCACCCAGAGUCUU--AUGGGUGGAGUCUGAAUUCCA
.........(((((..............)))))....(((((-((..(((((.((((.((..(.(.....).)..))--.)))).)))))..))))))). ( -22.74)
>DroSec_CAF1 5728 92 + 1
-------UAUUGUUCA-CUACUUAGCAUUUGUAACUUGAAAGCAUUGGCUCCGCCCACAAACCCUUGACUGAAACUUCAAGGGGAGGAGUCUAGUCAUUU
-------........(-(((....((.((((.....)))).))...((((((.........(((((((........)))))))..))))))))))..... ( -20.90)
>DroSim_CAF1 5711 92 + 1
-------UAUUGUUCC-CUACUUAGCAUUUGGAACUUGAAAGCAUUGGCUCCGCCCACAAACCCUUGACUGAAACUUCAAGAGGAGGAGUCUAGUCAUUU
-------....(((((-.............))))).(((.......(((((((....)...(((((((........))))).)).))))))...)))... ( -18.52)
>DroEre_CAF1 5762 91 + 1
-------UAUUCUUCA-CUACUUAGCACUUGUCCCCUGAAAGU-UUGGCUCCGCCUACAAACCCCUGGCGGAAACUUCAAGGGGAGGAGUCUAGUCAUUU
-------.........-....((((.((((.((((((..((((-(....((((((...........)))))))))))..)))))).))))))))...... ( -33.60)
>DroPer_CAF1 5815 97 + 1
CUAUUCCUAUUCUAUUUUUACCAAUCAUUAGAGACUCGGAAU-UUUUGCUCCUCCCACAACCCCCACCCAGAGUCUU--AUGGGUGGAGUCUGAAUUCCA
.........(((((..............)))))....(((((-((..(((((.((((.((..(.(.....).)..))--.)))).)))))..))))))). ( -25.04)
>consensus
_______UAUUCUUCA_CUACUUAGCAUUUGUAACUUGAAAGCUUUGGCUCCGCCCACAAACCCCUGACUGAAACUUCAAGGGGAGGAGUCUAGUCAUUU
..............................................((((((.(((.........................))).))))))......... (-10.88 = -11.21 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:47 2006