Locus 6449

Sequence ID 3R_DroMel_CAF1
Location 16,896,281 – 16,896,371
Length 90
Max. P 0.698354
window10507

overview

Window 7

Location 16,896,281 – 16,896,371
Length 90
Sequences 4
Columns 90
Reading direction reverse
Mean pairwise identity 94.63
Mean single sequence MFE -9.77
Consensus MFE -10.14
Energy contribution -9.57
Covariance contribution -0.56
Combinations/Pair 1.18
Mean z-score -1.37
Structure conservation index 1.04
SVM decision value 0.35
SVM RNA-class probability 0.698354
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16896281 90 - 27905053
ACAAGCACAAACUACGCAUACGACUUUGAUGCGCCAUAAUUUACAAUAAAAAAAGACAUGUAUACAAAAUAAAAAUACGUAAAAAUGUUA
...((((.......(((((.((....)))))))........................((((((...........)))))).....)))). (  -7.80)
>DroSec_CAF1 2511 90 - 1
ACAAGCACAAACUACGCAUACGACUUCGAUGCGCUAUAAUUUACAAUAAAAAAAGACAUGUAUACAAAAUAAAAAUACGUAAAAAUGUUA
...((((.......(((((.((....)))))))........................((((((...........)))))).....)))). ( -10.60)
>DroSim_CAF1 2489 90 - 1
ACAAGCACAAACUACGCAUACGACUUCGAUGCGCAAUAAUUUACAAUAAAAAAAGACAUGUAUACAAAAUAAAAAUACGUAAAAAUGUUA
...((((.......(((((.((....)))))))........................((((((...........)))))).....)))). ( -10.60)
>DroEre_CAF1 2534 88 - 1
ACAAGCACAAACUAUGCAUUCGACUUCGAUGCGCAAUAAUGUACAA--AAAAAGGACAUGUAUACAAAAUAAAAGUACGUAAAAAUGUUA
...((((........((((.((....))))))......((((((..--..........................)))))).....)))). ( -10.09)
>consensus
ACAAGCACAAACUACGCAUACGACUUCGAUGCGCAAUAAUUUACAAUAAAAAAAGACAUGUAUACAAAAUAAAAAUACGUAAAAAUGUUA
...((((.......(((((.((....)))))))........................((((((...........)))))).....)))). (-10.14 =  -9.57 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:46 2006