Locus 6448

Sequence ID 3R_DroMel_CAF1
Location 16,895,611 – 16,895,712
Length 101
Max. P 0.507433
window10506

overview

Window 6

Location 16,895,611 – 16,895,712
Length 101
Sequences 4
Columns 106
Reading direction reverse
Mean pairwise identity 74.40
Mean single sequence MFE -18.78
Consensus MFE -10.06
Energy contribution -9.94
Covariance contribution -0.13
Combinations/Pair 1.36
Mean z-score -1.79
Structure conservation index 0.54
SVM decision value -0.05
SVM RNA-class probability 0.507433
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16895611 101 - 27905053
ACUAUA---UUUA--ACAGUUUGUAUACCUUAUACACUUGCUGAUCUAGUUUAUAUAGACAAUUAAAGAGGGCUAAUAUACUCAUUUAGCCCCAUUUAAAUCGAUU
.(((((---(...--.((((.((((((...))))))...)))).........))))))....(((((..(((((((.........)))))))..)))))....... ( -21.22)
>DroSec_CAF1 1824 104 - 1
ACUAUAACAGUUA--ACAGUUUAUAUAGCUUUUACACUUGCUGAUCAAGUUUAUAUACUCAGUUAAAAAGGGCUAAUAUACUCCUUUAGCCCCAUUUAAAUCGAUU
..........(((--((.(..(((((((.......(((((.....))))))))))))..).)))))...(((((((.........))))))).............. ( -17.21)
>DroSim_CAF1 1821 95 - 1
ACUAUA-CAGUUUAUACAGUUUAUAUAGCUUUUACACUCGCUGAUCAAGUUUAUAUAGUCACUGAAGGAGGGC----------AUUUAGCCCAUUUUAAAUCGAUU
......-(.(((((..(((((((((((((((...((.....))...))).))))))))..)))).....((((----------.....))))....))))).)... ( -15.70)
>DroEre_CAF1 1821 100 - 1
ACAAUA---UUAA--ACAGCUUACAUAGCAUUUACUCUUGCUGAUCAAGUUCAAAUGGUCAGCUAAAAAGAGCUAAUAUCCAUCUUUGGUUCCAUUGA-AGUGAUU
...(((---(((.--...(((.....))).....(((((((((((((........))))))))....))))).)))))).((.(((..((...))..)-))))... ( -21.00)
>consensus
ACUAUA___GUUA__ACAGUUUAUAUAGCUUUUACACUUGCUGAUCAAGUUUAUAUAGUCAGUUAAAAAGGGCUAAUAUACUCAUUUAGCCCCAUUUAAAUCGAUU
................((((...................))))..........................(((((((.........))))))).............. (-10.06 =  -9.94 +  -0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:45 2006