Locus 6447

Sequence ID 3R_DroMel_CAF1
Location 16,888,792 – 16,888,912
Length 120
Max. P 0.746418
window10505

overview

Window 5

Location 16,888,792 – 16,888,912
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.94
Mean single sequence MFE -38.25
Consensus MFE -23.78
Energy contribution -22.90
Covariance contribution -0.88
Combinations/Pair 1.44
Mean z-score -2.00
Structure conservation index 0.62
SVM decision value 0.46
SVM RNA-class probability 0.746418
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16888792 120 + 27905053
CCUCCCGAUCCCGCUUGUCCUUGGCCUCACGGAGACGUUUCUGUUCCUCGGCCCGCUUACGUGACUCCUCCUCGGAGUUUUUAGCCAGAUUCUCGAACUUGGCACGCAAAUUGGAAGGCU
(((.(((((...((.((((...((((..((((((....)))))).....)))).(((.....((((((.....))))))...)))...............)))).))..))))).))).. ( -33.60)
>DroVir_CAF1 820 120 + 1
CCUCGCGAUCGCGUUUGUCUUUAGCUUCACGCAGACGCUUCUGCUCCUCGGAACGCUUGCGUGUCUCCUCCUCGGAGUUUUUGGCCAAAUUCUCAAAUUUGGCACGCAAAUUUGACGGUU
(((((((...((((((((............))))))))(((((.....))))))))((((((..((((.....))))......((((((((....))))))))))))))....)).)).. ( -37.70)
>DroGri_CAF1 843 120 + 1
CCUCGCGAUCGCGCUUAUCUUUGGCCUCCCGCAAGCGCUUCUGCUCCUCGGCACGCUUGCGCGUUUCCUCCUCGGAGUUCUUGGCCAAAUUCUCGAAUUUGGCGCGCAAGUUAGAGGGUU
((((((...((((((..(((((((((...((((((((....((((....))))))))))))......(((....))).....))))))).....))....))))))...))..))))... ( -43.90)
>DroWil_CAF1 841 120 + 1
CCUCGCGAUCUCUUUUAUCCUUGGCUUCACGUAAACGUUUUUGCUCUUCAGCACGUUUACGACUCUCCUCCUCCGAGUUCUUGGCCAAGUUUUCAAAUUUGGCACGUAAAUUUGAUGGCU
....((.............(((((((...(((((((((....(((....))))))))))))((((.........))))....)))))))...(((((((((.....)))))))))..)). ( -30.90)
>DroAna_CAF1 819 120 + 1
CUUCGCGAUCUCGUUUGUCCUUGGCUUCCCUGAGGCGUUUUUGUUCCUCGGCCCGCUUACGAGACUCCUCCUCAGAGUUCUUGGCCAGGUUCUCGAACUUGGCGCGCAGAUUGGAAGGCU
((((.(((((((((........(((....((((((..(....)..))))))...)))..((((((((.......))).)))))((((((((....))))))))))).))))))))))... ( -40.40)
>DroMoj_CAF1 831 120 + 1
CCUCGCGGUCUCGCUUGUCCUUAGCUUCGCGCAAACGCUUCUGCUCUUCGGCACGUUUGCGUGACUCCUCCUCAGAGUUUUUCGCCAAGUUCUCAAAUUUGGCACGUAAGUUUGAGGGCU
....((((....(((.......))).(((((((((((....((((....)))))))))))))))..)).(((((((.((....((((((((....))))))))....)).))))))))). ( -43.00)
>consensus
CCUCGCGAUCUCGCUUGUCCUUGGCUUCACGCAAACGCUUCUGCUCCUCGGCACGCUUACGUGACUCCUCCUCGGAGUUCUUGGCCAAAUUCUCAAAUUUGGCACGCAAAUUUGAAGGCU
....(((....)))........(((((((((((((((...(((.....)))..))))))))......(((....)))......((((((((....)))))))).........))).)))) (-23.78 = -22.90 +  -0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:44 2006