Locus 6446

Sequence ID 3R_DroMel_CAF1
Location 16,887,261 – 16,887,358
Length 97
Max. P 0.959906
window10504

overview

Window 4

Location 16,887,261 – 16,887,358
Length 97
Sequences 3
Columns 97
Reading direction reverse
Mean pairwise identity 75.37
Mean single sequence MFE -18.07
Consensus MFE -11.07
Energy contribution -11.63
Covariance contribution 0.56
Combinations/Pair 1.19
Mean z-score -2.05
Structure conservation index 0.61
SVM decision value 1.51
SVM RNA-class probability 0.959906
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16887261 97 - 27905053
GGCCUAACAAAUCAUUUUACUAAGUAAAAUGAUUUCAUUGGAUACGGGAAUUCACAAAUUUCUAUAAGAAGAUAAGAACGAGCAUAUUGUUGGGUUC
((((((((((((((((((((...)))))))))).........((..((((((....))))))..))....................)))))))))). ( -21.30)
>DroSec_CAF1 17578 78 - 1
GUCCCAAUAAAUCC--------AAUGAAAUCAUUUUA--------GGGAAUUUACAAAUAUCUAUAU---GAUAAGAACGAGCAGAUUGUUGGGUUC
..((((((((.(((--------((((....))))...--------.))).........((((.....---))))............))))))))... ( -14.20)
>DroSim_CAF1 18106 78 - 1
GACCCAACAAAUCC--------AAUGAAAUCAUUUUA--------GGGAAAUUACAAAUUUCUAUAU---GAUAAGAACGAGCAGAUUGUUGGGUUG
((((((((((.((.--------...)).(((((....--------.((((((.....))))))..))---))).............)))))))))). ( -18.70)
>consensus
GACCCAACAAAUCC________AAUGAAAUCAUUUUA________GGGAAUUUACAAAUUUCUAUAU___GAUAAGAACGAGCAGAUUGUUGGGUUC
((((((((((............((((....))))...........(((((((....))))))).......................)))))))))). (-11.07 = -11.63 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:43 2006