Locus 6444

Sequence ID 3R_DroMel_CAF1
Location 16,879,808 – 16,879,910
Length 102
Max. P 0.714769
window10501

overview

Window 1

Location 16,879,808 – 16,879,910
Length 102
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 81.60
Mean single sequence MFE -13.12
Consensus MFE -4.92
Energy contribution -5.25
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -3.52
Structure conservation index 0.37
SVM decision value 0.38
SVM RNA-class probability 0.714769
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16879808 102 - 27905053
UCCCAUUCAU-UUGUGGUUAAUUGAAAUGUGCCAAACAAUUGUACAAAACAAAAACUACAACAAAAUCCACCAACUAUUU-CAAUUGACAA-ACACAAAAACAAA
.........(-(((((((((((((((((((.....))..((((.....))))........................))))-))))))))..-.))))))...... ( -16.60)
>DroPse_CAF1 8582 84 - 1
UCCCAUUCAUUUUGUGGCUAAUUGAAAUGUACAAAA-------------C-----CUACAACAAAAUACAAAAAAUAUUCCCAAUUGACA---CACAAAAACAAA
.........((((((((.((((((.(((((......-------------.-----...................)))))..)))))).).---)))))))..... (  -8.97)
>DroSim_CAF1 10662 103 - 1
UCCCAUUCAU-UUGUGGUUAAUUGAAAUGUGCGAAACAAAUGUACAAAACAACCACUACAACAAAAUCCACCAACUAUUC-CAAUUGACAAAACACAAAAACAAA
.........(-(((((((((((((.((((((.((......((((............))))......))))).....))).-))))))))....))))))...... ( -12.30)
>DroEre_CAF1 10008 103 - 1
UCCCAUUCAU-UUGUGGUUAAUUGAUAUGUGCGAAACAAAUGUACAAAACAACUACUACAACUGAAUCCACGAACUAUUUCCAAUUGACAA-CCACAAAAACAAA
.........(-(((((((((((((....(((.((..((..((((............))))..))..)))))(((....)))))))))...)-)))))))...... ( -16.30)
>DroYak_CAF1 10882 103 - 1
UCCCAUUCAU-UUGUGGUUAAUUGAAAUGUGCGAAACAAAUGUACAAAACAACAACUACAACAAAAUCCACGAACUAUUUCCAAUUGACAA-CCACAAAAACAAA
.........(-(((((((((((((...((((((.......)))))).........................(((....)))))))))...)-)))))))...... ( -15.60)
>DroPer_CAF1 8559 84 - 1
UCCCAUUCAUUUUGUGGCUAAUUGAAAUGUACAAAA-------------C-----CUACAACAAAAUACAAAAAAUAUUCCCAAUUGACA---CACAAAAACAAA
.........((((((((.((((((.(((((......-------------.-----...................)))))..)))))).).---)))))))..... (  -8.97)
>consensus
UCCCAUUCAU_UUGUGGUUAAUUGAAAUGUGCGAAACAAAUGUACAAAACAAC_ACUACAACAAAAUCCACAAACUAUUCCCAAUUGACAA__CACAAAAACAAA
...........(((((((((((((.........................................................))))))))....)))))....... ( -4.92 =  -5.25 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:41 2006