Locus 6442

Sequence ID 3R_DroMel_CAF1
Location 16,875,552 – 16,875,660
Length 108
Max. P 0.782599
window10498

overview

Window 8

Location 16,875,552 – 16,875,660
Length 108
Sequences 3
Columns 110
Reading direction forward
Mean pairwise identity 79.68
Mean single sequence MFE -17.53
Consensus MFE -13.77
Energy contribution -14.00
Covariance contribution 0.23
Combinations/Pair 1.10
Mean z-score -1.58
Structure conservation index 0.79
SVM decision value 0.56
SVM RNA-class probability 0.782599
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16875552 108 + 27905053
AUGAUGGUAUCGUUUUCUCAAGUUCCGCAAGAAAGAUACAUAAACAAAGAUCAAAAUAAUUCAAUGAAAUGAAU--ACAUUGAAUUGAAUACUCUUAGUGAGGUCCAAAG
......(((((...((((...........)))).))))).........((((....((((((((((........--.))))))))))..(((.....))).))))..... ( -16.70)
>DroSec_CAF1 5864 90 + 1
ACG----UA--------------UCCGCAAGAAAGAGACAUAAACAAAGAGCAAAAUAAUUUAAUGAGAUGAAU--ACAUUGAAUUGAAUACUCUUAGUGUGGUCCACAG
..(----(.--------------.(((((...(((((.......(.....).......(((((((..((((...--.))))..))))))).)))))..)))))...)).. ( -16.00)
>DroSim_CAF1 5864 92 + 1
ACG----UA--------------UCCGCAAGAAAGAGACAUAAACAAAGACCAAAAUAAUUUAAUGAGAUUAUUCAUCAUUGAAUUGAAUAGUCUUAGUGUGGUCCACAG
..(----(.--------------..(....)...(.(((....((.(((((.....(((((((((((((....)).)))))))))))....))))).))...)))))).. ( -19.90)
>consensus
ACG____UA______________UCCGCAAGAAAGAGACAUAAACAAAGACCAAAAUAAUUUAAUGAGAUGAAU__ACAUUGAAUUGAAUACUCUUAGUGUGGUCCACAG
.........................(....).....(((....((.(((((.....((((((((((...........))))))))))....))))).))...)))..... (-13.77 = -14.00 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:38 2006