| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,875,387 – 16,875,501 |
| Length | 114 |
| Max. P | 0.604395 |
| Location | 16,875,387 – 16,875,501 |
|---|---|
| Length | 114 |
| Sequences | 3 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 92.38 |
| Mean single sequence MFE | -23.13 |
| Consensus MFE | -18.14 |
| Energy contribution | -19.70 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.604395 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16875387 114 + 27905053 AAAUCCACUAUUGCGAGUUAUGCCAAGCUGAAUUGCAUUUUUUUCAAUGGCAAAUCUUAAAGUCAAACGAUGGAUUUUAAAGCUAUGUUAUAGCUUUAACAAGUUUUAGACCAU ..((((.((((((.(((..((((.((......))))))..))).))))))...........(((....)))))))(((((((((.(((((......)))))))))))))).... ( -23.30) >DroSec_CAF1 5706 107 + 1 AAAUCCACUAUUGCGAGGUAUGCCA------AUUGCAUUU-UUUCAAUGGCAAAUCUUAAAGUCAAACGAUUCAUUUUAAAGCUAUAUUAUAGCUUUAACAAGUUUUAGACCAU .......(((..(((((((.(((((------.(((.....-...)))))))).)))))..................((((((((((...))))))))))...))..)))..... ( -23.20) >DroSim_CAF1 5700 113 + 1 AAAUCCACUAUUGCGAGAUAUGCCAAGUUGAAUUGCAUUU-UUUCAAUUGCAAAUCUUAAAGUCAAACGAUUCAUUUUAAAGCUAUAUUAUAGCUUUAACAAGUUUUAGACCAU .......(((..(((((((.(((..(((((((........-.)))))))))).)))))..................((((((((((...))))))))))...))..)))..... ( -22.90) >consensus AAAUCCACUAUUGCGAGAUAUGCCAAG_UGAAUUGCAUUU_UUUCAAUGGCAAAUCUUAAAGUCAAACGAUUCAUUUUAAAGCUAUAUUAUAGCUUUAACAAGUUUUAGACCAU .......(((..(((((((.(((((...((((..........)))).))))).)))))..................((((((((((...))))))))))...))..)))..... (-18.14 = -19.70 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:37 2006