Locus 6440

Sequence ID 3R_DroMel_CAF1
Location 16,871,190 – 16,871,283
Length 93
Max. P 0.500000
window10496

overview

Window 6

Location 16,871,190 – 16,871,283
Length 93
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 80.93
Mean single sequence MFE -24.18
Consensus MFE -15.64
Energy contribution -16.75
Covariance contribution 1.11
Combinations/Pair 1.38
Mean z-score -1.37
Structure conservation index 0.65
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16871190 93 - 27905053
ACUUUCCCGAUUCCGUUAUUAUGGAAUCACCCAGUCGCGGUCCUAUCUGGAUGGACUUUCGAAUGCGGGACAAUGUGAACAAGGGCUUCAAUA
.....(((((((((((....)))))))).(((..(((.(((((.........)))))..)))....)))....((....)).)))........ ( -27.60)
>DroPse_CAF1 1265 93 - 1
AUUUUCCCGAUGCUCCAAUAGUUGAUACGCCCCAUCGCGGCCCCAUCUGGAUGACCUUUAACAUGCGGGACAAUGUGAACAAGGGCUUCAACA
....................(((((...((((..(((((.((((((...((......))...))).)))....)))))....)))).))))). ( -23.00)
>DroSim_CAF1 1420 93 - 1
ACUUUCCCGAUUCCGUCAUUAUGGAAUCACCCAAUCGCGGUCCUAUCUGGAUGGACUUCCGCAUGCGAGACAACGUGAACAAAGGUUUCAAUA
......((((((((((....))))))))......(((((((((.........)))).((((....)).))...))))).....))........ ( -23.30)
>DroEre_CAF1 1437 93 - 1
ACUUUUCCGAUUCUGUCAUUAUGGAAUCCCCCAGUCACGGUCCUAUCUGGAUGGACUUUCGAAUGCGAAACAACGUGAACAAGGGAUUCAAUA
.......................(((((((....(((((((((.........))))(((((....)))))...)))))....))))))).... ( -26.60)
>DroYak_CAF1 1549 93 - 1
ACUUUUCCGAUUCCAUCAUUUUGGAAUCCCCCGGUCGCGGUCCCAUCUGGAUAGACUUUCAAAUACGGAACAACGUGAACAAGGGAUUCAAUA
........(((((((......))))))).(((((((...((((.....)))).))))......((((......)))).....)))........ ( -25.20)
>DroPer_CAF1 1268 93 - 1
ACUUUCCCGAUGCUCCAAUAGUUGAUACGCCCCAUCGCGGCCCCAUCUGGAUGACCUUUAACAUGCGGGACAAUGUGAACAAAGGCUUCAACA
....................(((((...(((...(((((.((((((...((......))...))).)))....))))).....))).))))). ( -19.40)
>consensus
ACUUUCCCGAUUCCGUCAUUAUGGAAUCACCCAAUCGCGGUCCCAUCUGGAUGGACUUUCAAAUGCGGGACAACGUGAACAAGGGCUUCAAUA
........((((((((....)))))))).(((..(((((.((((((.((((......)))).))).)))....)))))....)))........ (-15.64 = -16.75 +   1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:36 2006