Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,385,957 – 2,386,051 |
Length | 94 |
Max. P | 0.978531 |
Location | 2,385,957 – 2,386,051 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 81.69 |
Mean single sequence MFE | -21.96 |
Consensus MFE | -15.14 |
Energy contribution | -15.42 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.15 |
Mean z-score | -2.60 |
Structure conservation index | 0.69 |
SVM decision value | 1.82 |
SVM RNA-class probability | 0.978531 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2385957 94 + 27905053 GUGGUUUUUAAAUAGUCUUUUGUGAAUAAUUCAUUUAUUUUU-------UUUUCUGAUUAAGGUGCUGCGAAAGCAGCCUUUACUGUAAAGAGCUUGUUUU ..(((((((..((((........((((((.....))))))..-------.........(((((.(((((....)))))))))))))).)))))))...... ( -20.90) >DroSec_CAF1 98519 93 + 1 UUGGUUUUUAAGUAGUCUUUUGUAAAUUAUUCAUUUAUUUUU-------UUU-UGGAUUAAGAUGCUGCGAAAGCAGCGUUUACUGAAAAAAGCUUGUUUU ..(((((((...((((((.....(((.((......)).))).-------...-.))))))(((((((((....)))))))))......)))))))...... ( -22.80) >DroSim_CAF1 91242 92 + 1 UUGGUUUUUAAGUAGUCUUUUGUGAAUUAUUCAUUUAUUUU--------UUA-UGGAUUAAGCUGCUGCGAAAGCAGCGUUUACUGAAAAAAGCUUGUUUU ..(((((((...(((...((..((((..((......))..)--------)))-..)).(((((.(((((....)))))))))))))..)))))))...... ( -22.40) >DroEre_CAF1 92851 97 + 1 ---GGUUUCAAAUAGUCCUCAGUGAAUUAUUCAUUUAUUAGUAUAUUUUUUU-UUGAUUAAGGUGCUGCGAAAGCAGCCUUUACUGCAAAGAGCUUGUUUU ---......((((((..((((((((((.....)))))))............(-(((..(((((.(((((....))))))))))...))))))).)))))). ( -22.60) >DroYak_CAF1 87038 100 + 1 UUGGUUUUUGAAUAGUCUUCUGUGAAUUAUUCAUUUAUUUUUAUUUUUUUGC-UGGCUUAAGUUGCUGCAAAAGCAGCCUUUACUAUAAAGAGCUGGUUUU ........(((((((((......).))))))))............(((((((-.(((.......))))))))))(((((((((...))))).))))..... ( -21.10) >consensus UUGGUUUUUAAAUAGUCUUUUGUGAAUUAUUCAUUUAUUUUU_______UUU_UGGAUUAAGGUGCUGCGAAAGCAGCCUUUACUGAAAAGAGCUUGUUUU ..(((((((...(((......((((((.....))))))....................(((((.(((((....)))))))))))))..)))))))...... (-15.14 = -15.42 + 0.28)
Location | 2,385,957 – 2,386,051 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 81.69 |
Mean single sequence MFE | -13.26 |
Consensus MFE | -10.60 |
Energy contribution | -9.80 |
Covariance contribution | -0.80 |
Combinations/Pair | 1.27 |
Mean z-score | -2.37 |
Structure conservation index | 0.80 |
SVM decision value | 1.79 |
SVM RNA-class probability | 0.977541 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2385957 94 - 27905053 AAAACAAGCUCUUUACAGUAAAGGCUGCUUUCGCAGCACCUUAAUCAGAAAA-------AAAAAUAAAUGAAUUAUUCACAAAAGACUAUUUAAAAACCAC ......((.(((((.........(((((....)))))...............-------.........(((.....)))..)))))))............. ( -11.20) >DroSec_CAF1 98519 93 - 1 AAAACAAGCUUUUUUCAGUAAACGCUGCUUUCGCAGCAUCUUAAUCCA-AAA-------AAAAAUAAAUGAAUAAUUUACAAAAGACUACUUAAAAACCAA ..........(((((.((((...(((((....)))))...........-...-------.....(((((.....)))))........)))).))))).... ( -12.60) >DroSim_CAF1 91242 92 - 1 AAAACAAGCUUUUUUCAGUAAACGCUGCUUUCGCAGCAGCUUAAUCCA-UAA--------AAAAUAAAUGAAUAAUUCACAAAAGACUACUUAAAAACCAA ..........(((((.((((...((((((.....))))))........-...--------........(((.....)))........)))).))))).... ( -12.10) >DroEre_CAF1 92851 97 - 1 AAAACAAGCUCUUUGCAGUAAAGGCUGCUUUCGCAGCACCUUAAUCAA-AAAAAAAUAUACUAAUAAAUGAAUAAUUCACUGAGGACUAUUUGAAACC--- ....(((((.....))(((....(((((....))))).(((((.....-.......(((....)))..(((.....))).))))))))..))).....--- ( -14.00) >DroYak_CAF1 87038 100 - 1 AAAACCAGCUCUUUAUAGUAAAGGCUGCUUUUGCAGCAACUUAAGCCA-GCAAAAAAAUAAAAAUAAAUGAAUAAUUCACAGAAGACUAUUCAAAAACCAA .......((((((...(((....(((((....))))).))).)))..)-)).................((((((..((......)).))))))........ ( -16.40) >consensus AAAACAAGCUCUUUACAGUAAAGGCUGCUUUCGCAGCACCUUAAUCCA_AAA_______AAAAAUAAAUGAAUAAUUCACAAAAGACUAUUUAAAAACCAA ......((.(((((.........(((((....)))))...............................(((.....)))..)))))))............. (-10.60 = -9.80 + -0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:12 2006