Locus 6437

Sequence ID 3R_DroMel_CAF1
Location 16,861,207 – 16,861,327
Length 120
Max. P 0.605017
window10491

overview

Window 1

Location 16,861,207 – 16,861,327
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.92
Mean single sequence MFE -35.14
Consensus MFE -30.98
Energy contribution -31.18
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.26
Structure conservation index 0.88
SVM decision value 0.14
SVM RNA-class probability 0.605017
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16861207 120 - 27905053
GGUGUUUAUAAAACUAACAAAUUUGUUCUUUCAAUUAGUGGUUAUUCGACUACCCUGCCCAGGUGUCGCUCUGCGGAUCGCAGAUCUGGUGGUCCACGGAGGUGAACAUCGCCUUUAGCC
(((((((((..(((((......(((......)))....)))))...((((...(((....))).))))(((((.(((((((.......))))))).)))))))))))))).......... ( -36.20)
>DroSec_CAF1 14164 120 - 1
GAUGUUUGUAAAACUAACAAAUUUAUUCUUUCAAUUAGUGGUUAUUCGACUACCCUGCCCAGGUGUCCCUCUGCGGAUCGCAGAUCUGGUGGUCCACGGAGGUGAACAUCGCCUUUAGCC
((.((((((.......))))))....)).........((((((....))))))...((..(((((((((((((.(((((((.......))))))).)))))).))....)))))...)). ( -34.90)
>DroSim_CAF1 13051 120 - 1
GGUGUUUAUAAAACUAACAAAUUUGUUCUUUCAAUUAGUGGUUAUUCGACUACCCUGCCCAGGUGUCCCUCUGCGGAUCGCAGAUCUGGUGGUCCACGGAGGUGAACAUCGCCUUUAGCC
((((((((...(((((......(((......)))....)))))....(((...(((....))).)))((((((.(((((((.......))))))).)))))))))))))).......... ( -35.40)
>DroEre_CAF1 14809 120 - 1
AGUGCUUACAAAAUUAACAAAUUUGUUCUUCCAAUUAGUGGUUAUUCGACUACCCUGCCCAGGUGUCCCUCUGCGGAUCGCAGAUCUGGUGGUCCACGGAGGUGAACAUCGCCUUUAGCC
((.((................................((((((....))))))........((((((((((((.(((((((.......))))))).)))))).).)))))))))...... ( -32.90)
>DroYak_CAF1 16251 120 - 1
AGUGCUUAAAAAAUGAACAAAUUUGUUCUUUCAAUUAGUGGUUAUUCGACUACCCUGCCCAGGUGUCCCUCUGCGGAUCGCAGAUCUGGUGGUCCACGGAGGUGAACAUCGCCUUUAGCC
.(.((.........(((((....))))).........((((((....))))))...)).).((((((((((((.(((((((.......))))))).)))))).).))))).......... ( -36.30)
>consensus
GGUGUUUAUAAAACUAACAAAUUUGUUCUUUCAAUUAGUGGUUAUUCGACUACCCUGCCCAGGUGUCCCUCUGCGGAUCGCAGAUCUGGUGGUCCACGGAGGUGAACAUCGCCUUUAGCC
.....................................((((((....))))))...((..(((((((((((((.(((((((.......))))))).)))))).))....)))))...)). (-30.98 = -31.18 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:31 2006