Locus 6436

Sequence ID 3R_DroMel_CAF1
Location 16,858,910 – 16,859,030
Length 120
Max. P 0.994587
window10490

overview

Window 0

Location 16,858,910 – 16,859,030
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 90.44
Mean single sequence MFE -37.99
Consensus MFE -34.35
Energy contribution -34.02
Covariance contribution -0.33
Combinations/Pair 1.29
Mean z-score -2.45
Structure conservation index 0.90
SVM decision value 2.49
SVM RNA-class probability 0.994587
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16858910 120 - 27905053
AACUGUUUUUUAAUACCAGCGAACACGCCGGCCGACUGUCCAAAAGAAUGGCACGAACUGUAUUUUGUUUUUGCCUGUAUUUGGGCCUUCGGAUCGGCCAUGUUCCAGGAUCAAGCCAUU
...............((.(.(((((.(((((((((..(((((((.(...((((.((((........)))).))))..).)))))))..)))).)))))..)))))).))........... ( -39.70)
>DroVir_CAF1 13550 120 - 1
AACUGUUUUCUAAUCCCGGCGAAUACGCCAGCCGAUUGUCCAAAAGAGUGGCACGAGCUGUAUUUUGUUUUUGCCUGCAUUUGGGCAUUUGGCUCGGCCAUGUUCCAGGAUCAAGCCAUU
....((((....((((..(.(((((.(((((((((.((((((((.(...((((.((((........)))).))))..).)))))))).)))))).)))..)))))).)))).)))).... ( -42.40)
>DroGri_CAF1 14104 120 - 1
AACUGUUUUCUAAUACCAGCGAAUACGCCGGCCGAUUGCCCAAAAGAAUGGCACGAAUUGUACUUUGUUUUUGCCUGUAUUUGGGCAUUCGGUUCGGCCAUGUUCCAGGAUCAAGCCAUU
...............((.(.(((((.(((((((((.((((((((.(...((((.((((........)))).))))..).)))))))).)))).)))))..)))))).))........... ( -41.20)
>DroWil_CAF1 6786 120 - 1
AACAGUUUUCUAAUACCAGCAAACACUCCAGCCGAUUGUCCCAAAGAAUGGCACGAGUUAUAUUUUGUUUUUGCCUGUAUUUGGGCGUUCGGUUCGGCUAUGUUUCAGGAUCAAGCCAUU
...............((.(.(((((..((((((((.((.((((((....((((((((......)))))....)))....)))))))).)))))).))...)))))).))........... ( -30.70)
>DroMoj_CAF1 14022 120 - 1
AACUGUUUUCUAAUACCAGCUAACACACCGGCCGACUGUCCAAAAGAGUGGCACGAACUGUAUUUCGUUUUUGCCUGCAUUUGGGCAUUCGGCUCGGCCAUGUUUCAGGAUCAAGCCAUU
...............((....((((..((((((((.((((((((.(...((((.((((........)))).))))..).)))))))).))))).)))...))))...))........... ( -38.40)
>DroAna_CAF1 11348 120 - 1
AACUGUUUUCUAAUCCCAGCGAACACGCCAGCCGAUUGUCCAAAAGAAUGGCACGAACUGUACUUUGUUUUUGCCUGUAUCUGGGCCUUCGGAUCGGCCAUGUUCCAGGAUCAAGCCAUU
....((((....((((..(.(((((.(((..((((..(((((.......((((.((((........)))).))))......)))))..))))...)))..)))))).)))).)))).... ( -35.52)
>consensus
AACUGUUUUCUAAUACCAGCGAACACGCCAGCCGAUUGUCCAAAAGAAUGGCACGAACUGUAUUUUGUUUUUGCCUGUAUUUGGGCAUUCGGAUCGGCCAUGUUCCAGGAUCAAGCCAUU
...............((.(.(((((.(((((((((.((((((((.(...((((.((((........)))).))))..).)))))))).)))))).)))..)))))).))........... (-34.35 = -34.02 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:30 2006