Locus 6434

Sequence ID 3R_DroMel_CAF1
Location 16,856,830 – 16,856,950
Length 120
Max. P 0.997375
window10486

overview

Window 6

Location 16,856,830 – 16,856,950
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 94.78
Mean single sequence MFE -35.38
Consensus MFE -34.53
Energy contribution -34.42
Covariance contribution -0.11
Combinations/Pair 1.14
Mean z-score -1.63
Structure conservation index 0.98
SVM decision value 2.85
SVM RNA-class probability 0.997375
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16856830 120 - 27905053
AAAAUUGCUGGAAAUUCUUCAUCGAUCGUGUGCGCAAGCAGCUUAAGAUAGUUUUGUGCUUUUCACCAGUGGGCUCGACACUGCGUGUUCGGUCGAGAAAAUUCCCGGCCAUCAUCAAUG
......(((((.((((.(((.(((((((...(((((((..(((......))))))))))....((((((((.......))))).)))..)))))))))))))).)))))........... ( -37.90)
>DroVir_CAF1 10439 120 - 1
AAAACUGCUGGAAAUUCUUCAUCGAUCGUGUGCGCAAACAAUUGAAGAUAGUUCUGUGUUUUUCACCAGUGGGCUCAACAUUGCGUGUUCGGUCGAGAAAAUUCCCUGCCAUCAUCAAUG
......((.((.((((.(((.(((((((.(..(((((....((((.....((((.(((.....)))....))))))))..)))))..).)))))))))))))).)).))........... ( -29.90)
>DroSec_CAF1 9746 120 - 1
AAAAUUGCUGGAAAUUCUUCAUCGAUCGUGUGCGCAAGCAGCUUAAGAUAGUUUUGUGCUUUUCACCAGUGGGUUCGACACUGCGUGUUCGGUCGAGAAAAUUCCCGGCCAUCAUCAAUG
......(((((.((((.(((.(((((((...(((((((..(((......))))))))))....((((((((.......))))).)))..)))))))))))))).)))))........... ( -37.90)
>DroEre_CAF1 10237 120 - 1
AAAAUUGCUGGAAAUUCUUCAUCGAUCGUGUGCGCAAGCAGCUAAAGAUAGUUUUGUGCUUUUCACCAGUGGGUUCGACACUGCGUGUUCGGUCGAGAAAAUUCCCGGCCAUCAUCAAUG
......(((((.((((.(((.(((((((...(((((((..((((....)))))))))))....((((((((.......))))).)))..)))))))))))))).)))))........... ( -38.50)
>DroWil_CAF1 4736 120 - 1
AAAACUGUUGGAAAUUCUUCAUCGAUCGUGUGCGCAAACAGCUCAAAAUAGUUCUGUGCUUUUCACCAGUGGGUUCAACAUUGCGUGUUCGGUCGAGAAAAUUCCCUGCCAUCAUCAAUG
......((.((.((((.(((.(((((((.(..(((((((((..(......)..)))).......(((....)))......)))))..).)))))))))))))).)).))........... ( -29.60)
>DroYak_CAF1 11812 120 - 1
AAAAUUGCUGGAAAUUCUUCAUCGAUCGUGUGCGCAAGCAGCUAAAGAUAGUUUUGUGCUUUUCACCAGUGGGUUCGACACUGCGUGUUCGGUCGAGAAAAUUCCCGGCCAUCAUCAAUG
......(((((.((((.(((.(((((((...(((((((..((((....)))))))))))....((((((((.......))))).)))..)))))))))))))).)))))........... ( -38.50)
>consensus
AAAAUUGCUGGAAAUUCUUCAUCGAUCGUGUGCGCAAGCAGCUAAAGAUAGUUUUGUGCUUUUCACCAGUGGGUUCGACACUGCGUGUUCGGUCGAGAAAAUUCCCGGCCAUCAUCAAUG
......(((((.((((.(((.(((((((...((((((..((((......))))))))))....((((((((.......))))).)))..)))))))))))))).)))))........... (-34.53 = -34.42 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:26 2006