Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 16,856,110 – 16,856,230 |
Length | 120 |
Max. P | 0.656786 |
Location | 16,856,110 – 16,856,230 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.56 |
Mean single sequence MFE | -47.13 |
Consensus MFE | -26.70 |
Energy contribution | -26.23 |
Covariance contribution | -0.47 |
Combinations/Pair | 1.41 |
Mean z-score | -2.02 |
Structure conservation index | 0.57 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.656786 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16856110 120 - 27905053 UCAAGAGCUUUGGCUCGCCGCCAGGUGCCGUCACCAAUGUAACCGCCGCAGUGAUGGUGCUGCUCUCCCAGGGUGGCAAGGUGCCCAAAGAUCGCUCUUGGAAAGCGGCCAAAAUCGCAA (((((((((((((..(((((((.((..(((((((...(((.......))))))))))..))((((.....)))))))..)))).)))))....))))))))...((((......)))).. ( -46.00) >DroVir_CAF1 9719 120 - 1 UGAAGAGCUUUGGUUCACCACCGGGCGCGGUUACCAAUGUGACAGCUGCGGUCAUGGUGCUAUUAGCCCCUGGCGGUAAACUGCCCAAGGAUCGCUCCUGGAAGGCGGCUAAAAUUUCCA ....((((....))))..((((((((((((((..(.....)..)))))).))).)))))...((((((((((((((....)))))..((((....))))...))).))))))........ ( -41.30) >DroGri_CAF1 11327 120 - 1 UUAAAAGCUUUGGUUCUCCGCCGGGCGCGGUUACUAAUGUAACGGCUGCUGUUAUGGUGCUCCUGGCACCUGGCGGCAAGCUGCCCAAAGAUCGCUCCUGGAAGGCAGCCAAAAUCUCCA ........(((((((.((..(((((.((((((((....)))))(((((((((((.(((((.....)))))))))))).))))..........))).)))))..)).)))))))....... ( -50.00) >DroWil_CAF1 4016 120 - 1 UAAAGAGUUUCGGUUCGCCUCCGGGAGCUGUUACGAAUGUAACGGCUGCUGUAAUGGUUCUACUAUCACCUGGAGGCAAACUGCCCAAAGAUCGCAGCUGGAAGGCAGCUAAAAUUGCAA ..........(((((.((((((((((((((((((....))))))))).......((((......))))))))))))).)))))............(((((.....))))).......... ( -42.70) >DroMoj_CAF1 11264 120 - 1 UCAAGAGCUUUGGCUCUCCACCGGGUGCGGUGACAAAUGUGACCGCUGCCGUCAUGGUCCUGCUGGCACCUGGGGGCAAGCUGCCCAAGGAUCGAUCCUGGAAAGCGGCCAAAAUUUCCA ........(((((((.(((.(((((((((((.((....)).))))).((((.((......)).))))))))))((((.....)))).((((....)))))))....)))))))....... ( -48.70) >DroAna_CAF1 8622 120 - 1 UCAAGAGCUUUGGUUCGCCGCCUGGCGCGGUCACCAAUGUGACGGCUGCCGUCAUGGUGCUGCUCUCCCCGGGAGGCAAGUUACCCAAAGACCGCUCCUGGAAGGCGGCCAAAAUCGCCA ....((..((((((.((((.((.((.((((((......(((((((...)))))))((((((((.((((...)))))).)).))))....)))))).)).))..)))))))))).)).... ( -54.10) >consensus UCAAGAGCUUUGGUUCGCCGCCGGGCGCGGUUACCAAUGUAACGGCUGCCGUCAUGGUGCUGCUAGCACCUGGAGGCAAGCUGCCCAAAGAUCGCUCCUGGAAGGCGGCCAAAAUCGCCA ........(((((((.....(((((.((((((......(((((.......)))))((((((.(((.....))).))).....)))....)))))).))))).....)))))))....... (-26.70 = -26.23 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:25 2006