Locus 6429

Sequence ID 3R_DroMel_CAF1
Location 16,844,295 – 16,844,415
Length 120
Max. P 0.827116
window10475

overview

Window 5

Location 16,844,295 – 16,844,415
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 82.56
Mean single sequence MFE -45.23
Consensus MFE -31.24
Energy contribution -33.22
Covariance contribution 1.98
Combinations/Pair 1.28
Mean z-score -2.57
Structure conservation index 0.69
SVM decision value 0.70
SVM RNA-class probability 0.827116
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16844295 120 - 27905053
UUCAGCAGACUGCAGGCGGUAGGCAGGUUGAGCUCAUCAACGGCGGAGUCGUGCUCCCGGUUGUUGUACAACCGCUUGAAGUGCAUCAGACGCGUCUUGAUGGGCUCAAUCUUGUAGAUC
....((..((((....))))..))((((((((((((((((.((((..(((((((((.((((((.....))))))...))...))))..))).))))))))))))))))))))........ ( -51.10)
>DroVir_CAF1 802 120 - 1
UUGAGCAAACUACAGGCGGUCGGUAUAUUCAGCUCAUCCACAGAUGCAUCGUACUCGCGAUUGUUGUACAGGCGUUUGUAGUGCAUCAGACGCGUCUUGAUGGGCUCCACCUUGUAAAUA
..((((..((((((((((.((.(((((..((((((.......)).))(((((....))))))).))))).)))))))))))).(((((((....)).))))).))))............. ( -34.30)
>DroSec_CAF1 842 120 - 1
UUCAGCAGACUGCAGGCGGUAGGCAGGUUGAGCUCAUCAACGGCGGAAUCGUGCUCCCGGUUGUUGUACAACCGCUUAAAGUGCAUCAGACGCGUCUUGAUGGGCUCAAUCUUGUAGAUC
....((..((((....))))..))((((((((((((((((.(((((..(.((((.(.((((((.....))))))......).)))).)..).))))))))))))))))))))........ ( -47.10)
>DroWil_CAF1 791 120 - 1
UUCAAAAGACUGCAAGCGGUGGGUAAAGUCAUUUCAUCCACAUCCUUGUCAUACUCUCGAUUGUUAUACAAGCGCUUAUAGUGCAUAAGUUGAGACCGAAUCGGCUCCACCUUGUAGAUU
.........((((((..(((((....((((..(((....(((....))).....(((((((((.....)..((((.....))))...))))))))..)))..)))))))))))))))... ( -29.80)
>DroYak_CAF1 798 120 - 1
UUCAGCAGACUGCAGGCGGUAGGCAGGUUGAGCUCAUCGACGGCGGAGUCGUGCUCCCGGUUGUUGUACAACCGCUUAAAGUGCAUCAGACGCGUCUUGAUGGGCUCAAUCUUGUAGAUC
....((..((((....))))..))((((((((((((((((.((((..(((((((.(.((((((.....))))))......).))))..))).))))))))))))))))))))........ ( -50.40)
>DroAna_CAF1 751 120 - 1
UUCAGCAGACUGCAGGCGGUGGGCAGGUUGAGCUCAUCAACGGCGGCGUCGUGCUCUCGAUUGUUGUACAAUCGCUUAUAGUGCAUCAGACGCGCCUUGAUGGGCUCAACCUUAUAGAUA
....((..((((....))))..))((((((((((((((((.((((.((((((((.((((((((.....)))))).....)).))))..))))))))))))))))))))))))........ ( -58.70)
>consensus
UUCAGCAGACUGCAGGCGGUAGGCAGGUUGAGCUCAUCAACGGCGGAGUCGUGCUCCCGAUUGUUGUACAACCGCUUAAAGUGCAUCAGACGCGUCUUGAUGGGCUCAACCUUGUAGAUC
....((..((((....))))..))((((((((((((((((..(((.....(((((..((((((.....)))))).....)))))......)))...))))))))))))))))........ (-31.24 = -33.22 +   1.98)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:15 2006