Locus 6427

Sequence ID 3R_DroMel_CAF1
Location 16,825,001 – 16,825,104
Length 103
Max. P 0.662450
window10473

overview

Window 3

Location 16,825,001 – 16,825,104
Length 103
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 93.78
Mean single sequence MFE -24.86
Consensus MFE -22.96
Energy contribution -22.52
Covariance contribution -0.44
Combinations/Pair 1.19
Mean z-score -1.15
Structure conservation index 0.92
SVM decision value 0.27
SVM RNA-class probability 0.662450
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16825001 103 - 27905053
GACCCCACAGUCCUUGGAAUUCAUAAUUAGCUGGGCGACAGGUCGCCUUGAGUCUUCAAACGUGCCUUUCGCCCACCAAAUUUCCCCGACAUUUUCUUCGUUU
.........(((...((((......(((.(.(((((((.(((.(((.(((......)))..)))))).))))))).).)))))))..)))............. ( -26.00)
>DroSec_CAF1 9218 103 - 1
GACCCCACAGUCCUUGGAAUUCAUAAUUAGCUGGGCGACAGGUCGCCUUGGAUCUUCAAACGUGCCUUUCGCCCACCAAAUUUCCUCGACAUUUUCUUCGUUU
.........(((...((((......(((.(.(((((((.(((.(((.((((....))))..)))))).))))))).).)))))))..)))............. ( -26.20)
>DroSim_CAF1 7128 103 - 1
GACCCCACAGUCCUUGGAAUUCAUAAUUAGCCGGGCGACAGGUCGCCUUGGGUCUUCAAACGUGCCUUUCGCCCACCAAAUUUCCUCGACAUUUUCUUCGUUU
.........(((...((((......(((.(..((((((.(((.(((.((((....))))..)))))).))))))..).)))))))..)))............. ( -23.40)
>DroEre_CAF1 12413 102 - 1
GACCCCACAGUCCUUGGAAUUCAUAAUUAGCUGGGUGACAGGUCGCCUUGGGUCUUCA-GCGUGCCUUUCGCCCACCAAAUUUUCUCGACAUUUUCUUCGUAU
.........(((...((((.....((((.(.(((((((.(((.(((.((((....)))-).)))))).))))))).).)))))))).)))............. ( -23.90)
>DroYak_CAF1 17007 102 - 1
GGCCCCACAGUCCUUGGAAUCCAUAAUUAGCUGGGCGACAGGUCGCCUUGGGUCUUCA-ACGUGCCUUUCGUCCGCCAAAUAUUCUCGACAUUUUCUUCGCUU
(((.(((.......)))...............((((((.(((.(((.((((....)))-).)))))).))))))))).......................... ( -24.80)
>consensus
GACCCCACAGUCCUUGGAAUUCAUAAUUAGCUGGGCGACAGGUCGCCUUGGGUCUUCAAACGUGCCUUUCGCCCACCAAAUUUCCUCGACAUUUUCUUCGUUU
.........(((...((((......(((.(.(((((((.(((.(((..(((....)))...)))))).))))))).).)))))))..)))............. (-22.96 = -22.52 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:13 2006