| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,822,385 – 16,822,477 |
| Length | 92 |
| Max. P | 0.999990 |
| Location | 16,822,385 – 16,822,477 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 92.26 |
| Mean single sequence MFE | -25.00 |
| Consensus MFE | -24.28 |
| Energy contribution | -24.20 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.98 |
| Structure conservation index | 0.97 |
| SVM decision value | 5.60 |
| SVM RNA-class probability | 0.999990 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16822385 92 + 27905053 UUAAUGUUGCCAGUUUCGCUGGCAACUUGCCAGCCAAGUAACCCCAACAAUCCUGGCCGACUGGCAGCUCAACUUCUCCUACACAUCGAUGA .....((((((((((..((((((.....)))))).........(((.......)))..))))))))))........................ ( -28.40) >DroSec_CAF1 6282 92 + 1 UUAAUGUUGCCAGUUUCGCUGGCAACUUGCCAGCCAAGUAACCCCAACAAUCCUGACCGAUUGGCAGCUCAACUUCUCCUACACAUCGAUGA .....((((((((((((((((((.....))))))...((.......))......))..))))))))))........................ ( -24.50) >DroSim_CAF1 4169 92 + 1 UUAAUGUUGCCAGUUUCGCUGGCAACUUGCCAGCCAAGUAACCCCAACAAUCCUGACCGACUGGCAGCUCAACUUCUCCUACACAUCGAUGA .....((((((((((((((((((.....))))))...((.......))......))..))))))))))........................ ( -26.80) >DroEre_CAF1 9477 89 + 1 UUAAUGCUGCCAGUUUCGCUCGCAACUUGCCAGCCAAGUAACCCCAACAAUCCUGACUGACUGGCAGCCGAACUU---CUUUACAUCGAUGA .....(((((((((((((((.((.....)).)))...((.......))......))..)))))))))).......---.............. ( -22.30) >DroYak_CAF1 9568 89 + 1 UUAAUGUUGCCAGUUUCGCUGGCAACUUGCCAGCCAAGUAACCCCAACAAUCCCGACCGACUGCCAGCUGAACUC---CUGCACAUCGAUGA (..((((.((.(((((.((((((((((((.....)))))...........((......)).))))))).))))).---..))))))..)... ( -23.00) >consensus UUAAUGUUGCCAGUUUCGCUGGCAACUUGCCAGCCAAGUAACCCCAACAAUCCUGACCGACUGGCAGCUCAACUUCUCCUACACAUCGAUGA .....((((((((((((((((((.....))))))...((.......))......))..))))))))))........................ (-24.28 = -24.20 + -0.08)
| Location | 16,822,385 – 16,822,477 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 92.26 |
| Mean single sequence MFE | -29.94 |
| Consensus MFE | -24.72 |
| Energy contribution | -24.48 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.83 |
| SVM decision value | 1.11 |
| SVM RNA-class probability | 0.917169 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16822385 92 - 27905053 UCAUCGAUGUGUAGGAGAAGUUGAGCUGCCAGUCGGCCAGGAUUGUUGGGGUUACUUGGCUGGCAAGUUGCCAGCGAAACUGGCAACAUUAA .............((...((.....)).)).((((((((((.............))))))))))..((((((((.....))))))))..... ( -31.42) >DroSec_CAF1 6282 92 - 1 UCAUCGAUGUGUAGGAGAAGUUGAGCUGCCAAUCGGUCAGGAUUGUUGGGGUUACUUGGCUGGCAAGUUGCCAGCGAAACUGGCAACAUUAA ...(((((...........)))))..((((((((......))))((..((....))..)).)))).((((((((.....))))))))..... ( -27.70) >DroSim_CAF1 4169 92 - 1 UCAUCGAUGUGUAGGAGAAGUUGAGCUGCCAGUCGGUCAGGAUUGUUGGGGUUACUUGGCUGGCAAGUUGCCAGCGAAACUGGCAACAUUAA .............((...((.....)).)).((((((((((.............))))))))))..((((((((.....))))))))..... ( -28.72) >DroEre_CAF1 9477 89 - 1 UCAUCGAUGUAAAG---AAGUUCGGCUGCCAGUCAGUCAGGAUUGUUGGGGUUACUUGGCUGGCAAGUUGCGAGCGAAACUGGCAGCAUUAA ....(((.......---....)))((((((.((((((((((.............)))))))))).((((........))))))))))..... ( -28.52) >DroYak_CAF1 9568 89 - 1 UCAUCGAUGUGCAG---GAGUUCAGCUGGCAGUCGGUCGGGAUUGUUGGGGUUACUUGGCUGGCAAGUUGCCAGCGAAACUGGCAACAUUAA .....(((((((..---.((((..(((((((((((((((((.............))))))))))....)))))))..)))).)).))))).. ( -33.32) >consensus UCAUCGAUGUGUAGGAGAAGUUGAGCUGCCAGUCGGUCAGGAUUGUUGGGGUUACUUGGCUGGCAAGUUGCCAGCGAAACUGGCAACAUUAA ...............................((((((((((.............))))))))))..((((((((.....))))))))..... (-24.72 = -24.48 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:12 2006