Locus 6424

Sequence ID 3R_DroMel_CAF1
Location 16,817,130 – 16,817,228
Length 98
Max. P 0.576335
window10467

overview

Window 7

Location 16,817,130 – 16,817,228
Length 98
Sequences 4
Columns 98
Reading direction forward
Mean pairwise identity 92.35
Mean single sequence MFE -22.75
Consensus MFE -19.42
Energy contribution -19.80
Covariance contribution 0.38
Combinations/Pair 1.04
Mean z-score -1.46
Structure conservation index 0.85
SVM decision value 0.09
SVM RNA-class probability 0.576335
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16817130 98 + 27905053
GCAGCUGAAAUUCAUCUCGGUCUGUUUUUGAUUUCCUCGGAAAAUUAACUUUGUUUGCCUGUAGUCUUGCGUCUGCUCUGCCAGAUUUUAUAGCUGCA
(((((((.((...((((.(((...(((((((.....))))))).................((((.(....).))))...))))))).)).))))))). ( -22.40)
>DroSec_CAF1 1096 98 + 1
GCAGCUGAAAUUCAUCUCGGUCUGUUUUUCAUUUCCUCGGAAAAUUAACUUUGUUUGCCUGUAGUCUUGCGUCUGCUCUGCCAGAUUUUAUAGCUGCA
((((((((((.((.....(((..(((((((........)))))))..)))......((..((((.(....).))))...))..)).))).))))))). ( -23.80)
>DroEre_CAF1 4364 97 + 1
GCAGCUGAAUUUCAUCUCGGUCUGUUUUUCAUUUCCUUGGAAAAUGAACU-UGUUUUUGUGUAGUCUUGCGUCUGCUCUGCCAGAUUUUAUAGCUGCA
(((((((...........(((..((((((((......))))))))..)))-....((((.((((....((....)).)))))))).....))))))). ( -26.30)
>DroYak_CAF1 4358 97 + 1
GCAGCUGAAAUUCAUCUCGGUCUGUUUUUCAGUUCCUCGGAAAAUGAACUUUGUUUGCAUUUAGU-UUGCGUCUGCUCUGGCCGAUUUUAUAGCUACA
(.(((((.((......((((((.((((.....(((....)))...))))...((.((((......-.))))...))...))))))..)).))))).). ( -18.50)
>consensus
GCAGCUGAAAUUCAUCUCGGUCUGUUUUUCAUUUCCUCGGAAAAUGAACUUUGUUUGCCUGUAGUCUUGCGUCUGCUCUGCCAGAUUUUAUAGCUGCA
((((((((((.((.....(((..(((((((........)))))))..)))..........((((....((....)).))))..)).))).))))))). (-19.42 = -19.80 +   0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:08 2006