| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,813,675 – 16,813,795 |
| Length | 120 |
| Max. P | 0.581882 |
| Location | 16,813,675 – 16,813,795 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 85.83 |
| Mean single sequence MFE | -23.57 |
| Consensus MFE | -19.97 |
| Energy contribution | -19.87 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.581882 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16813675 120 + 27905053 GUGACGAAUGACGACUUAUUCUUUUUUGUCAAUAUUGGGGAAACAGACCCCCAAACUGCCAACUUAAUCGCUAAACCAAGUUCUCGUUACUUUAACAAUAUAAGUUGAAUGACACUUUAC ((((.((((((....)))))).....(((((...((((((........)))))).....(((((((...(((......)))....((((...))))....)))))))..)))))..)))) ( -24.00) >DroEre_CAF1 991 120 + 1 GUGACGAAUGACGACUUUUUCUUUUUUGUCAAUAUUGGGGGAACAGACCUCCAAACUGCCAACUUAAUCGCUAAACCAACUUCUCGUUACUUUAAUAAUCUAAGUUGAAUGACACUUUAC (((((((.((((((...........))))))...(((((((......))))))).............................))))))).............(((....)))....... ( -22.10) >DroYak_CAF1 1034 104 + 1 GUGACGAAUGAAGACGUUUUCUUUUUUGUCAAUAUUGGGGGAAGAAACCUCCAAACUGCCAACUUAAUC----------------GUUACUUUAACAAUCUAAGUUGAAUGACACUUUAC .(((((((.(((((.....))))))))))))...(((((((......))))))).....(((((((((.----------------((((...)))).)).)))))))............. ( -24.60) >consensus GUGACGAAUGACGACUUUUUCUUUUUUGUCAAUAUUGGGGGAACAGACCUCCAAACUGCCAACUUAAUCGCUAAACCAA_UUCUCGUUACUUUAACAAUCUAAGUUGAAUGACACUUUAC .(((((((.((........))...)))))))...(((((((......)))))))...............................((((.((((((.......))))))))))....... (-19.97 = -19.87 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:07 2006