| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,813,229 – 16,813,332 |
| Length | 103 |
| Max. P | 0.758544 |
| Location | 16,813,229 – 16,813,332 |
|---|---|
| Length | 103 |
| Sequences | 3 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 89.97 |
| Mean single sequence MFE | -29.73 |
| Consensus MFE | -28.58 |
| Energy contribution | -28.03 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.96 |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.758544 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16813229 103 - 27905053 AAGGGUGCGAAUUCAAUAAUUCGAUUUCCAAUGAUGAGCAUGUUAGGUGCUGGUUGUGUGACGAAUAUGCUCACGCGAAGUGCGCGGGCAUAACUGAUAGUGU ..(((..((((((....))))))...))).(..((.(((((.....))))).))..)........(((((((.(((.....))).)))))))........... ( -29.90) >DroEre_CAF1 586 103 - 1 AAGGCUGCGAAUUCAACAAUUUGAUUUCCAAUGAUGAGCAUAUUAGGUGCUGGUUGUGUGAUGAAUAUGCUCACGCAAAGUGCGCGGGCAUAACUAAUAAUGU .....((.(((.((((....)))).)))))(..((.(((((.....))))).))..)........(((((((.(((.....))).)))))))........... ( -27.40) >DroYak_CAF1 629 103 - 1 AAGGCUGCGAACUAAACAAUUCGAUUUCCAAUGACGAGCAUGUGAGGUGCUGGUUGUGUGACGAAUAUGCCCAUGCUAAGUGCGCGGGCAUAACUGACAGUGU ...((((((..........((((.((....(..((.(((((.....))))).))..)..))))))(((((((.(((.....))).)))))))..)).)))).. ( -31.90) >consensus AAGGCUGCGAAUUCAACAAUUCGAUUUCCAAUGAUGAGCAUGUUAGGUGCUGGUUGUGUGACGAAUAUGCUCACGCAAAGUGCGCGGGCAUAACUGAUAGUGU ..((...((((((....))))))....)).(..((.(((((.....))))).))..)........(((((((.(((.....))).)))))))........... (-28.58 = -28.03 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:06 2006