| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,799,491 – 16,799,591 |
| Length | 100 |
| Max. P | 0.928155 |
| Location | 16,799,491 – 16,799,591 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 76.09 |
| Mean single sequence MFE | -20.53 |
| Consensus MFE | -19.41 |
| Energy contribution | -19.13 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.95 |
| SVM decision value | 1.19 |
| SVM RNA-class probability | 0.928155 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16799491 100 + 27905053 UUAAUUAACCUUGUAAAU--------------AACCUUCCUUACGAAUACUAUAGACUCGUCUGGUGGUUCCCGGCUAUUCCAUUUGCGCUGGCCAUCUUCAUCUAUGACGAGA ..........((((((..--------------........))))))..........((((((.(((((...(((((............)))))......)))))...)))))). ( -20.80) >DroSec_CAF1 589 100 + 1 UUAAUUAACCUUUUAAUU--------------AACCAUCCCUACCCAUACCAUAGACUCGUCUGGUGGUUCCCGGCUAUUCCAUUUGCGCUGGCUAUCUUCAUCUAUGACGAGA ((((((((....))))))--------------))......................((((((.(((((...(((((............)))))......)))))...)))))). ( -21.20) >DroEre_CAF1 600 94 + 1 UUUUC------UAUAAUU--------------AACGUUCCAUACCCGAACUGUAGACUCGUCUGGUGGUUCCCGGCUAUUCCAUUUGCGCUGGCCAUCUUCAUCUAUGACGAGA ...((------((((...--------------...((((.......))))))))))((((((.(((((...(((((............)))))......)))))...)))))). ( -23.30) >DroYak_CAF1 566 94 + 1 UUUUA------UAUAAUU--------------GACUUUCCAUACCCAAACUAUAGACUCGUCUGGUGGUUCCCGGCUAUUCCAUUUGCGCUGGCCAUCUUCAUCUAUGACGAGA .....------.......--------------........................((((((.(((((...(((((............)))))......)))))...)))))). ( -19.30) >DroAna_CAF1 507 84 + 1 CUAAAUG-----GUACAU-----------------CUCUCUUA--------ACAGACUUGUCUGGUGGUUCCCGGCUAUUCCAUUUGCGCUGGCCAUCUUCAUCUAUGACGAGA .......-----......-----------------........--------.....((((((.(((((...(((((............)))))......)))))...)))))). ( -17.20) >DroPer_CAF1 440 103 + 1 UUUCC------UUCAAUUUUACUGCAACUCCGAAUUCUCUAUACUC-----ACAGACUCGUCUGGUGGUUCCCGGCCAUUCCAUUUGCGCUGGCCAUCUUCAUCUAUGACGAGA .....------...................................-----.....((((((.(((((...(((((((.......)).)))))......)))))...)))))). ( -21.40) >consensus UUAAA______UAUAAUU______________AACCUUCCAUACCCA_ACUAUAGACUCGUCUGGUGGUUCCCGGCUAUUCCAUUUGCGCUGGCCAUCUUCAUCUAUGACGAGA ........................................................((((((.(((((...(((((((.......)).)))))......)))))...)))))). (-19.41 = -19.13 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:02 2006