Locus 6418

Sequence ID 3R_DroMel_CAF1
Location 16,795,539 – 16,795,629
Length 90
Max. P 0.906340
window10460

overview

Window 0

Location 16,795,539 – 16,795,629
Length 90
Sequences 5
Columns 90
Reading direction reverse
Mean pairwise identity 94.22
Mean single sequence MFE -8.91
Consensus MFE -7.72
Energy contribution -7.92
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.55
Structure conservation index 0.87
SVM decision value 1.05
SVM RNA-class probability 0.906340
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16795539 90 - 27905053
ACUUACCUUCGCACCACAAAUAAAAGGAUCUUUAUACGAAAAACCAAAACAAAUAUCUGUAGAGCUUCUACAGUAGAACAUAAAUCUAAA
.....((((..............)))).............................((((((.....))))))((((.......)))).. (  -8.94)
>DroSec_CAF1 28123 90 - 1
ACUUACCUUCGCACCACAAAUAAAAGGAUCUUUAUACGAAAAACCAAAACAAAUAUCUGUAGAGCUUCUACAGUAGAACAUAAAUCUAAA
.....((((..............)))).............................((((((.....))))))((((.......)))).. (  -8.94)
>DroSim_CAF1 33035 90 - 1
ACUUACCUUCGCACCACAAAUAAAAUGAUCUUUAUACGAAAAACCAAAACAAAUAUCUGUAGAGCUUCUACAGUAGAACAUAAAUCUAAA
..(((..(((.........(((((......))))).....................((((((.....))))))..)))..)))....... (  -7.80)
>DroEre_CAF1 23816 90 - 1
ACUUACCUUAGCACCACAAAUAAAAGGAUCUUCAUUUCAAAAAGAAAAACAAAUAUCUGUAGAGCUUCUACAGUAGAACAUAAAUCUAAA
.....((((..............))))...(((.((((.....)))).........((((((.....))))))..)))............ (  -9.94)
>DroYak_CAF1 10680 88 - 1
ACUUACCUUCGCACCACAAAUAAAAGGAUCUUCAUUCAAAAA--ACAAACAAAUAUCUGUAGAGCUUCUACAGUAGAACAUAAAUCUAAA
.....((((..............))))...............--............((((((.....))))))((((.......)))).. (  -8.94)
>consensus
ACUUACCUUCGCACCACAAAUAAAAGGAUCUUUAUACGAAAAACCAAAACAAAUAUCUGUAGAGCUUCUACAGUAGAACAUAAAUCUAAA
.....((((..............)))).............................((((((.....))))))((((.......)))).. ( -7.72 =  -7.92 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:01 2006