Locus 6417

Sequence ID	3R_DroMel_CAF1
Location	16,795,423 – 16,795,515
Length	92
Max. P	0.600455

overview

Window 9

Location	16,795,423 – 16,795,515
Length	92
Sequences	5
Columns	92
Reading direction	forward
Mean pairwise identity	79.67
Mean single sequence MFE	-17.40
Consensus MFE	-13.20
Energy contribution	-13.00
Covariance contribution	-0.20
Combinations/Pair	1.24
Mean z-score	-1.43
Structure conservation index	0.76
SVM decision value	0.14
SVM RNA-class probability	0.600455
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16795423 92 + 27905053
GAAAUUCAAUUUUGGGGCUUAAGCAUUUUUCCCAAGAUACCUGAAUUUAUGUUUUCCAGUUUCGGAAACAUUCGUACUUCUUUUGUUUGUAC
.(((((((((((((((((....))......))))))))...)))))))((((((.((......))))))))..((((..(....)...)))) ( -18.90)
>DroSec_CAF1 28011 92 + 1
GAAAUUCAAUUUUGGGGCUAAAGCAUCUUUCCCAAGAUACUUGAAUUUAUGUUUUCCAGUUUCGGAAACAUUCGUAUUUCUUUUUAUUGUAA
.(((((((((((((((((....))......))))))))...)))))))((((((.((......))))))))..................... ( -17.40)
>DroSim_CAF1 32919 92 + 1
GAAAUUCAAUUUUGGGGCUAAAGCAUCUUUCCCAAGAUAUCUGAAUUUAUGUUUUCCAGUUUCGGAAACAUUCGUAUUUCUUUUUGUUGUAC
.(((((((((((((((((....))......))))))))...)))))))((((((.((......))))))))..((((..(.....)..)))) ( -18.70)
>DroEre_CAF1 23700 92 + 1
GAAUUUCCAUUUUUGGGCUUAAGCAUCUUUCCAAAGAUGUCUGAAGUUCUAUUUUCCGGUUUUGGAAACAGUCGUAUAUCUUUCGUUUGUAC
((((((((((((((((((....))......)))))))))...)))))))....(((((....)))))((((.((.........)).)))).. ( -18.70)
>DroYak_CAF1 10580 77 + 1
GAAUUUCCGUUUUGGGGCUUAAGCAUUUUUCCAAAGAUAUAUUAAAUUAUAUUUUCCGGAUUCGAAAACAUUCAUAA---------------
........(((((.((((....)).....(((.((((((((......))))))))..))).)).)))))........--------------- ( -13.30)
>consensus
GAAAUUCAAUUUUGGGGCUUAAGCAUCUUUCCCAAGAUAUCUGAAUUUAUGUUUUCCAGUUUCGGAAACAUUCGUAUUUCUUUUGUUUGUAC
.(((((((((((((((((....))......))))))))...)))))))((((((((.......))))))))..................... (-13.20 = -13.00 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:00 2006