| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,794,075 – 16,794,165 |
| Length | 90 |
| Max. P | 0.846520 |
| Location | 16,794,075 – 16,794,165 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 73.01 |
| Mean single sequence MFE | -17.93 |
| Consensus MFE | -14.15 |
| Energy contribution | -14.32 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.85 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.846520 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16794075 90 + 27905053 AA----------CCGAUAACCCA-CCA--------CC-ACAAA---C----GUUUGCACGUUUAGGUGCCAGCCAUUUCCUUAGCUUAUGAGACGGCUGAAUCCGAUAUUAUGAAAC ..----------.((........-.((--------((-..(((---(----((....)))))).)))).(((((.((((..........)))).)))))....))............ ( -18.80) >DroVir_CAF1 6662 82 + 1 GG----------UUUUU-----------------------U--UACACUGCGCUCGCACGUUUAGGUGCCAGCCAUUUCCUUAGCCUAUGAGACGGCUGAAUCCGAUAUUAUGAAAC ((----------.....-----------------------.--.....((.(((.((((......)))).))))).....((((((........))))))..))............. ( -18.50) >DroEre_CAF1 22394 94 + 1 AA----------CUGAUAAUCCA-CCA--------CC-ACAAA---CGAUCGUUCGCACGUUUAGGUGCCAGCCAUUUCCUUAGCUUAUGAGACGGCUGAAUCCGAUAUUAUGAAAC ..----------...........-...--------..-.((..---..((((...((((......))))(((((.((((..........)))).)))))....))))....)).... ( -18.10) >DroWil_CAF1 20588 86 + 1 --------------------CCA-ACA--------AU-ACAAA-AUACAACGCUUGCACAUUCAGGUGCCAGCCAUUUCCUUAGCCUAUGAGACGGCUGAAUCCGAUAUUAUGAAAC --------------------...-...--------..-.((.(-((((...(((.((((......)))).))).......((((((........))))))....).)))).)).... ( -17.60) >DroYak_CAF1 9273 94 + 1 AA----------CCGAUUAUCCA-CAA--------CC-ACAAA---CGAUCGUUCGCACGUUUAGGUGCCAGCCAUAUCCUUAGCUUAUGAGACGGCUGAAUCCGAUAUUAUGAAAC ..----------...........-...--------..-.((..---..((((...((((......))))(((((.....((((.....))))..)))))....))))....)).... ( -16.80) >DroPer_CAF1 6068 114 + 1 AAAAAACUACACCCAACAACCCAACAAUCGAACAACCCCACUA---CGAUCGUUCGCACAUUUAGGUGCCAGCCAUUUCCCUAGCCUAUGAGACGGCUGAAUCCGAUAUUAUGAAAC ..........................((((.............---.........((((......))))(((((.((((..........)))).)))))....)))).......... ( -17.80) >consensus AA__________CCGAUAA_CCA_CCA________CC_ACAAA___CGAUCGUUCGCACGUUUAGGUGCCAGCCAUUUCCUUAGCCUAUGAGACGGCUGAAUCCGAUAUUAUGAAAC .......................................................((((......))))(((((.((((..........)))).))))).................. (-14.15 = -14.32 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:59 2006