| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 16,789,475 – 16,789,586 |
| Length | 111 |
| Max. P | 0.670775 |
| Location | 16,789,475 – 16,789,586 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 87.89 |
| Mean single sequence MFE | -26.03 |
| Consensus MFE | -22.46 |
| Energy contribution | -22.35 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.670775 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 16789475 111 - 27905053 ------GCACUUACAUUUUCGGGAUGUGUCUGAAAGCGCUGAUACAAUUCCUCAGGAGAGAUUUUAUGAAAAUCGAUAUCCAACUCCUGUUUGAGAUCAUCUAAAUUCUCCUUUUUA--- ------..............((((((((((..........))))).)))))..(((((((((((.....)))))(((.((.(((....))).)).)))........)))))).....--- ( -24.10) >DroVir_CAF1 1566 117 - 1 CGGUUUUUACUUACAUUUUCGGGAUGUGUCUGAAAACGCUGAUACAUUUCCUCAGGAGAGAUCUUAUGAUGAUCAAUAUCCAACUCCUGUUUGAGAUCAUCUAAGUUCUCCUUCUUU--- ....................(..(((((((..........)))))))..)...(((((((..((((.(((((((....((.(((....))).)))))))))))))))))))).....--- ( -30.60) >DroGri_CAF1 1719 114 - 1 ------GCACUUACAUUUUCGGGAUGUGUCUGAAAGCGCUGAUACAAUUCCUCAGGAGAGAUUUUAUGAAAGUCGAUAUCUAACUCCUGUUUGAGAUCAUCUAAAUUCUCUUUCUUAUUG ------..............((((((((((..........))))).))))).((((((((((.((((....)).)).))))..))))))...((((..........)))).......... ( -22.80) >DroWil_CAF1 15847 111 - 1 ------AAUCUUACAUUUUCGGGAUGUGUCUGAAAGCGCUGAUACAAUUCCUCAGGAGAGAUUUUAUGAUGGUCAAUAUCCAACUCCUGUUUGAGAUCAUCCAAAUUCUCCUUCUUA--- ------..............((((((((((..........))))).)))))..(((((((.(((...(((((((....((.(((....))).))))))))).)))))))))).....--- ( -25.90) >DroMoj_CAF1 1907 107 - 1 ----------UUACAUUUUCAGGAUGUGUCUGGAAACGCUGGUACAUUUCCUCAGGAGAGAUUUUAUGAUGGUCAAUAUCCAACUCCUGUUUGAGAUCAUCCAAGUUCUCCUUCUUA--- ----------..........((((.(((((..(.....)..).)))).)))).(((((((.......(((((((....((.(((....))).)))))))))....))))))).....--- ( -26.90) >DroAna_CAF1 1401 111 - 1 ------GGACUCACAUUCUCGGGAUGUGUCUGAAAGCGCUGAUACAAUUCCUCAGGAGAGAUUUUAUGAUGGUCGAUAUCCAACUCCUGUUUGAGAUCAUCCAAAUUCUCUUUCUUU--- ------.........((((.((((((((((..........))))))..)))).))))((((.(((..(((((((....((.(((....))).))))))))).))).)))).......--- ( -25.90) >consensus ______GCACUUACAUUUUCGGGAUGUGUCUGAAAGCGCUGAUACAAUUCCUCAGGAGAGAUUUUAUGAUGGUCAAUAUCCAACUCCUGUUUGAGAUCAUCCAAAUUCUCCUUCUUA___ ....................((((((((((.(......).))))))..)))).((((((.((((...(((((((....((.(((....))).))))))))).))))))))))........ (-22.46 = -22.35 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:57 2006