Locus 6413

Sequence ID 3R_DroMel_CAF1
Location 16,787,913 – 16,788,023
Length 110
Max. P 0.704801
window10455

overview

Window 5

Location 16,787,913 – 16,788,023
Length 110
Sequences 6
Columns 113
Reading direction reverse
Mean pairwise identity 80.28
Mean single sequence MFE -32.33
Consensus MFE -24.98
Energy contribution -25.73
Covariance contribution 0.75
Combinations/Pair 1.08
Mean z-score -1.33
Structure conservation index 0.77
SVM decision value 0.36
SVM RNA-class probability 0.704801
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16787913 110 - 27905053
AUUUACCUUGUACUGGCCAUCGGCUGUGCGAUUGUCGUCAUCGGUGGCUAUAACCGUGGCGACUCGAUAAGAGUCCGCCCUCCCAUGCUACGC---ACAUGAAGGUUUGGGUU
....((((.....((((((((((.((.(((.....))))))))))))))).(((((.((((((((.....)))).)))))...((((......---.))))..)))).)))). ( -37.70)
>DroVir_CAF1 4 92 - 1
AUUUACCUUGAAGUGGCCAUCGGCUGUGCGAUUGUCGUCAUCGGUUGCAAUAACCGUGGCGACUCGAUAGGAGUCCGCUCUCUCAAGCUGCG---------------------
......(((((((((((((.(((...((((((((.......))))))))....)))))))(((((.....)))))))))...))))).....--------------------- ( -32.60)
>DroGri_CAF1 2 87 - 1
AUUUACCUUGUAGCGGCCAUCGGCUGUGCGAUUGUCGUCAUCGGUUGCAAUAACCGUUGCGACUCGAUAAGAGUCCGCUCUCCCAUG--------------------------
............(((((.((((......)))).))))).((((((((((((....)))))))).)))).((((....))))......-------------------------- ( -26.00)
>DroWil_CAF1 14298 113 - 1
GUUUACCUUGUAGUGGCCAUCGGCUGUGCGAUUGUCGUCAUCGGUUGCAAUAACCGUGGCGACUCGAUAAGAGUCAGCUCUCCCAUGCUAUGUGGGGCAAUAGGGUUUGGUUU
....(((((((.((.((((.(((...((((((((.......))))))))....)))))))(((((.....)))))......(((((.....))))))).)))))))....... ( -41.10)
>DroMoj_CAF1 4 92 - 1
AUUUACCUUGAAGUGGCCAUCGGCUGUGCGAUUGUCGUCAUCGGUUGCAAUAACCGUGGCGACUCGAUAGGAGUCCGCUCUCUCUAGAUGCG---------------------
.....(((...(((.((((.(((...((((((((.......))))))))....))))))).)))....)))....((((((....))).)))--------------------- ( -29.90)
>DroPer_CAF1 2 86 - 1
AUUUACCUUGUAGUGACCAUCGGCUGUGCGAUUGUCGUCAUCGGUCGCAAUAACCGUGGCGACUCGAUAAGAGUCCGCUCUCCCAU---------------------------
...........((((.(((.(((...((((((((.......))))))))....)))))).(((((.....))))))))).......--------------------------- ( -26.70)
>consensus
AUUUACCUUGUAGUGGCCAUCGGCUGUGCGAUUGUCGUCAUCGGUUGCAAUAACCGUGGCGACUCGAUAAGAGUCCGCUCUCCCAUGCU_CG_____________________
...........((((((((.(((.((((((((((.......))))))).))).)))))))(((((.....))))))))).................................. (-24.98 = -25.73 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:55 2006