Locus 6412

Sequence ID 3R_DroMel_CAF1
Location 16,786,828 – 16,786,933
Length 105
Max. P 0.751038
window10454

overview

Window 4

Location 16,786,828 – 16,786,933
Length 105
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 97.89
Mean single sequence MFE -21.36
Consensus MFE -19.66
Energy contribution -19.34
Covariance contribution -0.32
Combinations/Pair 1.07
Mean z-score -1.36
Structure conservation index 0.92
SVM decision value 0.48
SVM RNA-class probability 0.751038
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16786828 105 - 27905053
GAAAUCAAAUCAAAUUAAUUAAAAAUACGUAUGUCUCGAGACGAAAGUAUGUAUACACUAAUGAAUGCAGAGGGCGAGGGGAAAGCGAGAACGCAAACCUGUCGC
.................................((((...((....)).(((((.((....)).)))))))))((((.(((...(((....)))...))).)))) ( -22.30)
>DroSec_CAF1 19420 104 - 1
GAAAUCAAAUCAAAUUAAUUAAAAAUACGUAUGUCUCGAGACGAAAGUAUGUAUACACUAAUGAAUGC-GAGGGCGAGGGGAAAGCGAGAACGUAAACCUGUCGC
.................................((((...((....))..((((.((....)).))))-))))((((.(((...(((....)))...))).)))) ( -19.80)
>DroSim_CAF1 18735 104 - 1
GAAAUCAAAUCAAAUUAAUUAAAAAUACGUAUGUCUCGAGACGAAAGUAUGUAUACACUAAUGAAUGC-GAGGGCGAGGGGAAAGCGAGAACGCAAACCUGUCGC
.................................((((...((....))..((((.((....)).))))-))))((((.(((...(((....)))...))).)))) ( -21.40)
>DroEre_CAF1 15300 104 - 1
AAAAUCAAAUCAAAUUAAUUAAAAAUACGUAUGUCUCGAGAGGAAAGUAUGUAUACACUAAUGAAUGC-GAGGGCGAGGGGAAAGUGAGAACGCAAACCUGUCGC
.........((..(((.((((...((((((((.(..(....)..).))))))))....)))).)))..-))..((((.(((...(((....)))...))).)))) ( -20.70)
>DroYak_CAF1 2124 104 - 1
GAAAUCAAAUCAAAUUAAUUAAAAAUACGUAUGUCUCGAGAGGAAAGUAUGUAUACACUAAUGAAUGC-GAGGGCGAGGGGAAAGCGAGAACGCAAACCUGUCGC
.........((..(((.((((...((((((((.(..(....)..).))))))))....)))).)))..-))..((((.(((...(((....)))...))).)))) ( -22.60)
>consensus
GAAAUCAAAUCAAAUUAAUUAAAAAUACGUAUGUCUCGAGACGAAAGUAUGUAUACACUAAUGAAUGC_GAGGGCGAGGGGAAAGCGAGAACGCAAACCUGUCGC
.........((..(((.((((...((((((((...((.....))..))))))))....)))).)))...))..((((.(((...(((....)))...))).)))) (-19.66 = -19.34 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:54 2006