Locus 6411

Sequence ID 3R_DroMel_CAF1
Location 16,785,784 – 16,785,874
Length 90
Max. P 0.543843
window10453

overview

Window 3

Location 16,785,784 – 16,785,874
Length 90
Sequences 4
Columns 102
Reading direction forward
Mean pairwise identity 91.15
Mean single sequence MFE -14.62
Consensus MFE -13.27
Energy contribution -13.78
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.31
Structure conservation index 0.91
SVM decision value 0.02
SVM RNA-class probability 0.543843
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16785784 90 + 27905053
ACACAUUUCCCAGAUACUUUUGUAUUUG------------CACUUUUUUGCAUUGAUUGAACAAUUAGCGCGUCAAUUCGAUGCACAGCUCUUUCCCUCCAA
..........(((((((....)))))))------------........((((((((((((............)))).))))))))................. ( -16.00)
>DroSec_CAF1 18325 102 + 1
ACACAUUUCCCAGAUACUUUUGUAUUUGUAUACUUUUGUACACUUUUUUGCAUUGAUUGAACAAUUAGCGCGUCAAUUCGAUGCAGAGCUCUUUCCCUCCAA
..........(((((((....)))))))..(((....))).....(((((((((((((((............)))).))))))))))).............. ( -18.90)
>DroEre_CAF1 14252 88 + 1
ACACAUUUCCCAGAUACUUUUGUAUUUG------------CACUU--UUGCAUUGAUUGAACAAUUAGCGCGUCAAUUCGAUACACAGCUCUUUCCCUCCAA
..........(((((((....)))))))------------.....--..((.((((((....)))))).))(((.....))).................... ( -10.40)
>DroYak_CAF1 1055 90 + 1
ACACAUUUCCCUGAUACUUUUGUAUUUG------------CACUUUUUUGCAUUGAUUGAACAAUUAGCGCGUCAAUUCGAUGCACAGCUCUUUCCCUCCAA
..........(((((((....))))...------------........((((((((((((............)))).))))))))))).............. ( -13.20)
>consensus
ACACAUUUCCCAGAUACUUUUGUAUUUG____________CACUUUUUUGCAUUGAUUGAACAAUUAGCGCGUCAAUUCGAUGCACAGCUCUUUCCCUCCAA
..........(((((((....)))))))....................((((((((((((............)))).))))))))................. (-13.27 = -13.78 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:53 2006