Locus 6410

Sequence ID 3R_DroMel_CAF1
Location 16,785,484 – 16,785,602
Length 118
Max. P 0.895875
window10452

overview

Window 2

Location 16,785,484 – 16,785,602
Length 118
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 90.21
Mean single sequence MFE -32.50
Consensus MFE -28.45
Energy contribution -27.82
Covariance contribution -0.63
Combinations/Pair 1.22
Mean z-score -1.85
Structure conservation index 0.88
SVM decision value 0.99
SVM RNA-class probability 0.895875
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 16785484 118 + 27905053
GGGUGAAAAUGCAUUUCUAAGAUACUAGAGAUGCCAGACACGAUGUGUUAUCUUGCCCAGUGAAACUGGUUUUUAUUUUCUUUUU--CGGGGUUACUAUGAAGGGGAAAAAACGAGCCUA
(((..(....(((((((((......)))))))))..(((((...)))))...)..))).........(((((.(.((((((((((--((((....)).)))))))))))).).))))).. ( -35.40)
>DroSec_CAF1 18026 117 + 1
GGGUGAAAAUGCAUUUUUAAGAUACUAGAGAUGCCAGACACGAUGUGUUAUCUUGCCCAGUGAAACUGGUUUUUAUUUUCUUUUU--CGGGG-UACUAUGAAGGGGGGAAAACGAGCCUA
(((..(....(((((((((......)))))))))..(((((...)))))...)..))).........(((((.(.((..((((((--((...-.....))))))))..)).).))))).. ( -31.80)
>DroEre_CAF1 13951 119 + 1
GGGUGAAAAUGCAUUUCUCAGAUACUAGAGAUGUCUGACACAAUGUGUUAUCUUGCCCACAGAAACUGGUUUUUAUUUUCUUUUUUUCUGCG-UACUAUGAGGGGGGGAAAACAAACCUA
((((((.((((((((..((((((((....).)))))))...)))))))).))..)))).........(((((...(((((((((((((....-......))))))))))))).))))).. ( -31.60)
>DroYak_CAF1 754 118 + 1
GGGUGAAAAUGCAUUUCUCAGAUACUAGAGAUGCCAGACACGAUGUGUUAUCUUGCCCAGCCAAACUGGUUUCUAUUUUCUUUUUUUCUG-G-UACUAUGAAGAGGGAAAAACGAACCUA
(((..(....((((((((........))))))))..(((((...)))))...)..))).........(((((...((((((((((((.((-.-...)).))))))))))))..))))).. ( -31.20)
>consensus
GGGUGAAAAUGCAUUUCUAAGAUACUAGAGAUGCCAGACACGAUGUGUUAUCUUGCCCAGUGAAACUGGUUUUUAUUUUCUUUUU__CGGGG_UACUAUGAAGGGGGAAAAACGAACCUA
(((..(....(((((((((......)))))))))..(((((...)))))...)..))).........(((((.(.(((((((((((...(.....)...))))))))))).).))))).. (-28.45 = -27.82 +  -0.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:52 2006